Wall clock time and date at job start Mon Mar 30 2020 01:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00283 * 2 1 4 4 H 1.48505 * 109.47378 * 239.99986 * 3 2 1 5 5 H 1.48506 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47499 * 119.99560 * 3 2 1 7 7 C 1.37881 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99448 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99990 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.46705 * 124.33361 * 270.01901 * 10 9 7 12 12 C 1.54388 * 105.63901 * 196.87930 * 11 10 9 13 13 H 1.09000 * 115.74198 * 206.33442 * 12 11 10 14 14 C 1.53672 * 113.12021 * 66.88845 * 12 11 10 15 15 C 1.53676 * 87.50022 * 233.76342 * 14 12 11 16 16 C 1.53656 * 87.48891 * 24.97101 * 15 14 12 17 17 H 1.09014 * 116.71088 * 216.93270 * 16 15 14 18 18 C 1.34364 * 124.33211 * 90.02453 * 10 9 7 19 19 O 1.21283 * 124.85777 * 359.02252 * 18 10 9 20 20 H 0.97003 * 120.00406 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47247 * 59.99509 * 9 7 2 22 22 H 1.09000 * 109.46805 * 299.99451 * 9 7 2 23 23 H 1.08994 * 110.21749 * 315.92440 * 11 10 9 24 24 H 1.09004 * 110.21089 * 77.84137 * 11 10 9 25 25 H 1.08992 * 113.54782 * 348.42144 * 14 12 11 26 26 H 1.09002 * 113.54652 * 119.11075 * 14 12 11 27 27 H 1.09001 * 113.54741 * 270.31775 * 15 14 12 28 28 H 1.08998 * 113.54867 * 139.62200 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.7409 -4.2414 -1.2109 12 6 3.3287 -5.5933 -0.7523 13 1 4.1349 -5.9923 -1.3680 14 6 2.2583 -6.5823 -0.2645 15 6 3.0675 -6.7126 1.0354 16 6 3.6346 -5.3148 0.7431 17 1 4.6795 -5.1456 1.0036 18 6 2.6950 -4.1890 1.1101 19 8 2.4276 -3.8509 2.2437 20 1 -0.4851 0.8400 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 1.9441 -4.4038 -1.9366 24 1 3.5235 -3.6177 -1.6431 25 1 1.2777 -6.1280 -0.1234 26 1 2.2184 -7.5029 -0.8467 27 1 3.8180 -7.5024 1.0039 28 1 2.4483 -6.7527 1.9316 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260286602.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:28 Heat of formation + Delta-G solvation = -35.135395 kcal Electronic energy + Delta-G solvation = -12386.629842 eV Core-core repulsion = 10209.235245 eV Total energy + Delta-G solvation = -2177.394597 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.22306 -38.22282 -36.47076 -34.63116 -30.47984 -28.75169 -27.18915 -24.81348 -24.20287 -21.03455 -19.79940 -18.79270 -17.71403 -17.03063 -16.35023 -15.97089 -15.33853 -15.14660 -14.42125 -14.32645 -14.16993 -13.52886 -13.27579 -12.88288 -12.68925 -12.48210 -12.24180 -11.94185 -11.78974 -11.32681 -11.24010 -10.71857 -10.52115 -9.50489 -8.28981 -6.45925 1.34257 1.39108 1.46719 1.71696 2.28159 2.45248 2.99730 3.22324 3.51386 3.62489 3.90778 4.10147 4.47825 4.61304 4.68838 4.72443 4.89588 4.90986 4.97865 5.04794 5.11186 5.18811 5.48544 5.56142 5.83977 5.96899 6.51927 6.63005 7.19619 7.40729 8.78026 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.063569 B = 0.009698 C = 0.009531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.363519 B = 2886.573202 C = 2937.203120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.053 0.947 9 C 0.268 3.732 10 N -0.607 5.607 11 C 0.098 3.902 12 C -0.092 4.092 13 H 0.170 0.830 14 C -0.133 4.133 15 C -0.106 4.106 16 C -0.158 4.158 17 H 0.129 0.871 18 C 0.501 3.499 19 O -0.604 6.604 20 H 0.270 0.730 21 H 0.028 0.972 22 H -0.007 1.007 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.992 -12.668 -5.474 15.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.071 0.929 9 C 0.148 3.852 10 N -0.337 5.337 11 C -0.024 4.024 12 C -0.110 4.110 13 H 0.188 0.812 14 C -0.170 4.170 15 C -0.143 4.143 16 C -0.179 4.179 17 H 0.147 0.853 18 C 0.290 3.710 19 O -0.486 6.486 20 H 0.079 0.921 21 H 0.046 0.954 22 H 0.011 0.989 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.130 0.870 27 H 0.150 0.850 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.610 -12.299 -4.947 15.286 hybrid contribution -0.208 1.434 0.404 1.504 sum 7.402 -10.865 -4.543 13.910 Atomic orbital electron populations 1.70038 1.07642 1.28570 1.50385 1.25921 0.95892 1.03269 0.93981 0.85385 0.78288 0.77557 0.79088 1.18239 1.19948 1.20317 1.21692 0.93366 0.91977 1.52276 0.92864 1.18696 0.87460 0.83421 0.95671 1.48643 1.43997 1.33334 1.07768 1.22160 0.99240 0.94184 0.86780 1.23861 0.99949 0.93413 0.93811 0.81222 1.22864 0.96527 1.00360 0.97247 1.22725 0.99979 0.93891 0.97722 1.23293 0.99697 0.94473 1.00464 0.85318 1.21351 0.81298 0.84309 0.84041 1.90588 1.64734 1.69412 1.23885 0.92109 0.95378 0.98861 0.89882 0.90822 0.93182 0.87027 0.84956 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.61 15 2 C 0.01 0.52 5.46 84.66 0.46 0.98 15 3 Si 0.97 45.47 29.54 68.60 2.03 47.50 15 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 15 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 7 C -0.55 -33.18 9.39 25.60 0.24 -32.94 15 8 H 0.05 3.15 7.81 -2.91 -0.02 3.13 15 9 C 0.27 15.18 5.68 85.63 0.49 15.66 15 10 N -0.61 -27.73 2.78 -822.89 -2.29 -30.01 15 11 C 0.10 3.12 6.84 86.81 0.59 3.71 15 12 C -0.09 -2.02 5.24 -9.36 -0.05 -2.07 15 13 H 0.17 2.11 8.14 -2.39 -0.02 2.09 15 14 C -0.13 -2.91 7.29 31.05 0.23 -2.69 15 15 C -0.11 -2.41 7.67 31.04 0.24 -2.17 15 16 C -0.16 -4.65 5.05 -10.43 -0.05 -4.70 15 17 H 0.13 3.30 8.14 -2.38 -0.02 3.28 15 18 C 0.50 22.90 6.99 87.87 0.61 23.51 15 19 O -0.60 -34.22 17.59 -3.04 -0.05 -34.27 15 20 H 0.27 15.44 8.31 -92.71 -0.77 14.67 15 21 H 0.03 1.59 8.14 -2.39 -0.02 1.57 15 22 H -0.01 -0.43 7.93 -2.39 -0.02 -0.45 15 23 H 0.08 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.07 2.25 8.14 -2.38 -0.02 2.23 15 25 H 0.05 1.46 7.73 -2.39 -0.02 1.44 15 26 H 0.11 1.62 8.14 -2.39 -0.02 1.60 15 27 H 0.13 1.90 8.14 -2.39 -0.02 1.88 15 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 15 Total: -1.00 -77.15 241.03 3.86 -73.28 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: 1.13 Total: 0.81 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 2.76 Total: -0.70 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.00 Total: -86.62 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.05 Total: -34.27 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -77.15 3.86 -73.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286602.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.149 kcal (2) G-P(sol) polarization free energy of solvation -77.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds