Wall clock time and date at job start Mon Mar 30 2020 02:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35705 * 126.21817 * 2 1 4 4 N 1.40799 * 126.07149 * 0.02562 * 3 2 1 5 5 C 1.40230 * 107.85983 * 179.97438 * 3 2 1 6 6 N 1.30864 * 108.36304 * 359.97438 * 5 3 2 7 7 N 1.35962 * 126.22711 * 179.97438 * 2 1 3 8 8 C 1.46504 * 126.07109 * 359.97438 * 7 2 1 9 9 H 1.09001 * 109.47174 * 0.02562 * 8 7 2 10 10 C 1.52997 * 109.47167 * 240.02633 * 8 7 2 11 11 C 1.50696 * 109.47480 * 120.02327 * 8 7 2 12 12 H 1.08001 * 119.99669 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00619 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99467 * 0.02562 * 13 11 8 15 15 Si 1.86794 * 120.00481 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.46901 * 59.99715 * 15 13 11 17 17 H 1.48499 * 109.47403 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46940 * 300.00154 * 15 13 11 19 19 H 1.08997 * 109.47428 * 270.00108 * 1 2 3 20 20 H 1.09004 * 109.47503 * 30.00464 * 1 2 3 21 21 H 1.09007 * 109.47130 * 150.00082 * 1 2 3 22 22 H 0.96997 * 120.00021 * 180.02562 * 4 3 2 23 23 H 0.96997 * 119.99638 * 359.97438 * 4 3 2 24 24 H 1.08000 * 125.81346 * 180.26598 * 5 3 2 25 25 H 1.09001 * 109.47083 * 179.97438 * 10 8 7 26 26 H 1.09000 * 109.47589 * 299.99731 * 10 8 7 27 27 H 1.09005 * 109.47315 * 60.00184 * 10 8 7 28 28 H 0.97002 * 119.99454 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3088 1.0948 0.0000 4 7 1.8805 2.4361 0.0005 5 6 3.6398 0.6532 0.0006 6 7 3.6399 -0.6555 0.0015 7 7 2.3105 -1.0968 0.0005 8 6 1.8651 -2.4925 0.0016 9 1 0.7756 -2.5261 0.0016 10 6 2.3970 -3.1965 1.2515 11 6 2.3891 -3.1881 -1.2282 12 1 2.9938 -2.6450 -1.9393 13 6 2.0965 -4.5178 -1.4456 14 7 1.3596 -5.1790 -0.5798 15 14 2.7467 -5.3802 -2.9696 16 1 4.2309 -5.3350 -2.9687 17 1 2.2940 -6.7946 -2.9692 18 1 2.2314 -4.6965 -4.1830 19 1 -0.3634 0.0000 1.0276 20 1 -0.3634 0.8899 -0.5139 21 1 -0.3634 -0.8900 -0.5138 22 1 2.5332 3.1536 0.0001 23 1 0.9328 2.6425 0.0005 24 1 4.5154 1.2853 0.0048 25 1 2.0652 -4.2348 1.2526 26 1 3.4865 -3.1630 1.2516 27 1 2.0179 -2.6934 2.1411 28 1 1.1541 -6.1146 -0.7326 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260334229.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:59 Heat of formation + Delta-G solvation = 46.969174 kcal Electronic energy + Delta-G solvation = -12302.183228 eV Core-core repulsion = 10160.641704 eV Total energy + Delta-G solvation = -2141.541524 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.78444 -36.62627 -34.82581 -33.60593 -31.95502 -29.02418 -27.37752 -26.97156 -23.93517 -21.29661 -20.39898 -18.51479 -17.64996 -16.64338 -16.43445 -15.87740 -15.74592 -14.89411 -14.42765 -13.72599 -13.57309 -13.46658 -13.07599 -12.87726 -12.82269 -12.64958 -12.33030 -12.12182 -11.64041 -11.28096 -11.06835 -10.61006 -9.84839 -8.26622 -7.77127 -6.38741 1.28145 1.39447 1.41340 1.49866 2.03496 2.24150 2.39312 3.03586 3.45291 4.04239 4.24194 4.38168 4.60535 4.76105 4.78161 4.83333 4.90197 5.03336 5.22714 5.41822 5.59767 5.73431 5.84774 6.07643 6.41216 6.73894 6.96824 7.18186 7.30787 7.47289 8.80103 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.049886 B = 0.010578 C = 0.010214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.145575 B = 2646.275673 C = 2740.802171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.028 4.028 3 C 0.040 3.960 4 N -0.864 5.864 5 C -0.025 4.025 6 N -0.314 5.314 7 N -0.345 5.345 8 C 0.288 3.712 9 H 0.049 0.951 10 C -0.131 4.131 11 C -0.543 4.543 12 H 0.042 0.958 13 C 0.027 3.973 14 N -0.909 5.909 15 Si 0.964 3.036 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.273 1.273 19 H 0.079 0.921 20 H 0.097 0.903 21 H 0.054 0.946 22 H 0.404 0.596 23 H 0.399 0.601 24 H 0.200 0.800 25 H 0.083 0.917 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 10.545 1.072 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.158 4.158 3 C -0.069 4.069 4 N -0.414 5.414 5 C -0.211 4.211 6 N -0.139 5.139 7 N -0.133 5.133 8 C 0.188 3.812 9 H 0.067 0.933 10 C -0.190 4.190 11 C -0.581 4.581 12 H 0.061 0.939 13 C -0.174 4.174 14 N -0.548 5.548 15 Si 0.789 3.211 16 H -0.203 1.203 17 H -0.196 1.196 18 H -0.198 1.198 19 H 0.097 0.903 20 H 0.116 0.884 21 H 0.073 0.927 22 H 0.233 0.767 23 H 0.228 0.772 24 H 0.216 0.784 25 H 0.102 0.898 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.332 9.068 1.116 9.233 hybrid contribution -0.121 0.343 -0.684 0.775 sum -1.452 9.411 0.432 9.532 Atomic orbital electron populations 1.20236 0.86327 1.03362 1.02982 1.21006 0.95567 0.86853 1.12394 1.17455 0.91322 0.86795 1.11340 1.41255 1.09414 1.00471 1.90292 1.23892 0.97516 0.92136 1.07539 1.77104 1.00531 1.12819 1.23444 1.49001 1.02331 1.06729 1.55262 1.18860 0.94533 0.72637 0.95194 0.93291 1.21875 0.99150 1.02666 0.95310 1.21343 1.33772 0.96390 1.06585 0.93923 1.25574 0.94844 0.97228 0.99770 1.69923 1.37692 1.10664 1.36477 0.85518 0.78598 0.77645 0.79332 1.20263 1.19640 1.19817 0.90254 0.88442 0.92725 0.76691 0.77177 0.78352 0.89810 0.95314 0.95348 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.24 9.78 71.24 0.70 -1.55 15 2 C -0.03 -1.12 6.98 41.33 0.29 -0.83 15 3 C 0.04 1.41 7.22 37.60 0.27 1.68 15 4 N -0.86 -20.78 9.19 -51.73 -0.48 -21.26 15 5 C -0.02 -0.95 12.03 85.32 1.03 0.08 15 6 N -0.31 -15.01 12.41 -56.77 -0.70 -15.72 15 7 N -0.35 -16.72 3.29 -316.78 -1.04 -17.76 15 8 C 0.29 15.17 3.03 44.24 0.13 15.30 15 9 H 0.05 2.64 6.72 -2.39 -0.02 2.62 15 10 C -0.13 -6.71 9.23 71.98 0.66 -6.04 15 11 C -0.54 -31.13 8.77 25.60 0.22 -30.91 15 12 H 0.04 2.58 7.81 -2.91 -0.02 2.56 15 13 C 0.03 1.46 5.30 84.65 0.45 1.91 15 14 N -0.91 -50.43 11.32 21.45 0.24 -50.19 15 15 Si 0.96 44.02 29.54 68.60 2.03 46.04 15 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 19 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 20 H 0.10 2.39 7.61 -2.39 -0.02 2.37 15 21 H 0.05 1.91 7.13 -2.38 -0.02 1.90 15 22 H 0.40 7.62 8.96 -92.71 -0.83 6.79 15 23 H 0.40 7.97 8.22 -92.71 -0.76 7.20 15 24 H 0.20 5.83 8.06 -2.91 -0.02 5.81 15 25 H 0.08 4.48 6.07 -2.39 -0.01 4.47 15 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15 27 H 0.03 1.30 8.14 -2.38 -0.02 1.28 15 28 H 0.27 14.13 8.31 -92.71 -0.77 13.36 15 Total: -1.00 -65.14 242.73 3.39 -61.75 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -0.41 Total: 17.49 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 3.75 Total: -20.36 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -1.98 Total: -104.93 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -65.14 3.39 -61.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260334229.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.720 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds