Wall clock time and date at job start Mon Mar 30 2020 02:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35353 * 126.90646 * 2 1 4 4 C 1.50698 * 126.75662 * 359.97438 * 3 2 1 5 5 H 1.09005 * 109.46595 * 0.02562 * 4 3 2 6 6 C 1.52998 * 109.47117 * 120.00101 * 4 3 2 7 7 C 1.50700 * 109.47259 * 240.00197 * 4 3 2 8 8 H 1.07998 * 120.00013 * 0.02562 * 7 4 3 9 9 C 1.37872 * 120.00208 * 179.97438 * 7 4 3 10 10 N 1.31516 * 119.99825 * 0.02562 * 9 7 4 11 11 Si 1.86805 * 120.00327 * 179.97438 * 9 7 4 12 12 H 1.48498 * 109.46550 * 60.00070 * 11 9 7 13 13 H 1.48500 * 109.47093 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47032 * 300.00634 * 11 9 7 15 15 N 1.33772 * 106.49219 * 179.97438 * 3 2 1 16 16 N 1.28639 * 108.88871 * 359.97438 * 15 3 2 17 17 N 1.28713 * 110.17541 * 359.76090 * 16 15 3 18 18 C 1.46500 * 125.86955 * 180.24034 * 17 16 15 19 19 H 1.08999 * 109.47015 * 90.00423 * 1 2 3 20 20 H 1.09000 * 109.46646 * 209.99575 * 1 2 3 21 21 H 1.09000 * 109.47248 * 330.00293 * 1 2 3 22 22 H 1.09002 * 109.46945 * 300.00096 * 6 4 3 23 23 H 1.08996 * 109.47124 * 59.99961 * 6 4 3 24 24 H 1.08999 * 109.47271 * 180.02562 * 6 4 3 25 25 H 0.97002 * 119.99938 * 180.02562 * 10 9 7 26 26 H 1.08998 * 109.46943 * 270.17186 * 18 17 16 27 27 H 1.09003 * 109.46989 * 30.17106 * 18 17 16 28 28 H 1.08998 * 109.46974 * 150.16585 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3199 1.0823 0.0000 4 6 1.8960 2.5284 -0.0005 5 1 0.8076 2.5879 -0.0005 6 6 2.4442 3.2211 1.2487 7 6 2.4368 3.2100 -1.2310 8 1 3.0279 2.6517 -1.9418 9 6 2.1760 4.5460 -1.4499 10 7 1.4557 5.2258 -0.5846 11 14 2.8470 5.3911 -2.9748 12 1 2.3158 4.7185 -4.1875 13 1 2.4291 6.8161 -2.9753 14 1 4.3298 5.3104 -2.9734 15 7 3.5736 0.6157 0.0006 16 7 3.5393 -0.6702 0.0015 17 7 2.3198 -1.0818 0.0065 18 6 1.8861 -2.4812 0.0140 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3632 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 2.0530 2.7281 2.1387 23 1 3.5326 3.1615 1.2491 24 1 2.1373 4.2669 1.2485 25 1 1.2719 6.1657 -0.7388 26 1 1.7788 -2.8338 -1.0117 27 1 2.6286 -3.0889 0.5314 28 1 0.9284 -2.5619 0.5282 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260401581.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:02 Heat of formation + Delta-G solvation = 62.592246 kcal Electronic energy + Delta-G solvation = -12303.894543 eV Core-core repulsion = 10163.030486 eV Total energy + Delta-G solvation = -2140.864057 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.02432 -36.77014 -35.32592 -33.85892 -31.66301 -28.55956 -27.84358 -27.18633 -24.37292 -21.68094 -21.27593 -18.42004 -17.51402 -17.37607 -16.56750 -15.44189 -14.98193 -14.52524 -14.07864 -13.95146 -13.72420 -13.41216 -13.14505 -12.86154 -12.78064 -12.60506 -12.35749 -12.16505 -11.75708 -11.39578 -11.06145 -10.64160 -10.44865 -9.59392 -8.07947 -6.19322 0.77141 1.41786 1.44549 1.51826 1.72500 1.80728 2.47290 3.19383 3.64637 3.90546 4.15306 4.25470 4.34784 4.58304 4.69626 4.79000 4.92966 5.04586 5.06937 5.19090 5.24840 5.48639 5.62502 5.90069 5.93746 6.04270 6.37648 6.83450 7.46445 7.75643 8.96817 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.050884 B = 0.010446 C = 0.010085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.141506 B = 2679.781573 C = 2775.812126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.035 4.035 3 C -0.006 4.006 4 C 0.120 3.880 5 H 0.038 0.962 6 C -0.118 4.118 7 C -0.520 4.520 8 H 0.034 0.966 9 C 0.021 3.979 10 N -0.912 5.912 11 Si 0.952 3.048 12 H -0.272 1.272 13 H -0.275 1.275 14 H -0.281 1.281 15 N -0.309 5.309 16 N -0.134 5.134 17 N -0.290 5.290 18 C 0.071 3.929 19 H 0.086 0.914 20 H 0.106 0.894 21 H 0.080 0.920 22 H 0.024 0.976 23 H 0.016 0.984 24 H 0.068 0.932 25 H 0.264 0.736 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 -12.926 1.352 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.168 4.168 3 C -0.145 4.145 4 C 0.100 3.900 5 H 0.056 0.944 6 C -0.176 4.176 7 C -0.558 4.558 8 H 0.052 0.948 9 C -0.178 4.178 10 N -0.551 5.551 11 Si 0.777 3.223 12 H -0.197 1.197 13 H -0.200 1.200 14 H -0.207 1.207 15 N -0.174 5.174 16 N -0.112 5.112 17 N -0.086 5.086 18 C -0.068 4.068 19 H 0.104 0.896 20 H 0.124 0.876 21 H 0.098 0.902 22 H 0.043 0.957 23 H 0.035 0.965 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.133 -13.239 1.387 13.939 hybrid contribution -0.351 0.860 -0.766 1.204 sum -4.484 -12.380 0.621 13.181 Atomic orbital electron populations 1.20376 0.83090 1.04961 1.04200 1.22442 0.97903 0.86044 1.10371 1.22588 0.88855 0.98804 1.04265 1.17089 0.95598 0.83015 0.94282 0.94441 1.21562 0.98004 1.02278 0.95759 1.21158 1.32872 0.95335 1.06457 0.94765 1.25572 0.95335 0.97583 0.99299 1.69951 1.39413 1.09282 1.36460 0.85719 0.78547 0.77743 0.80264 1.19722 1.19985 1.20680 1.74903 1.23395 1.00847 1.18289 1.78044 1.03126 1.07141 1.22899 1.47457 1.04275 1.09943 1.46973 1.22673 1.04061 0.73708 1.06378 0.89591 0.87558 0.90156 0.95674 0.96492 0.91303 0.92636 0.87754 0.87242 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 9.84 71.24 0.70 -1.03 15 2 C -0.04 -1.30 7.00 41.36 0.29 -1.01 15 3 C -0.01 -0.29 5.69 41.60 0.24 -0.06 15 4 C 0.12 6.39 2.68 -12.29 -0.03 6.36 15 5 H 0.04 1.99 6.97 -2.38 -0.02 1.97 15 6 C -0.12 -6.17 8.95 71.98 0.64 -5.53 15 7 C -0.52 -30.51 8.55 25.60 0.22 -30.29 15 8 H 0.03 2.10 7.74 -2.91 -0.02 2.08 15 9 C 0.02 1.20 5.30 84.65 0.45 1.65 15 10 N -0.91 -52.43 11.32 21.45 0.24 -52.19 15 11 Si 0.95 45.28 29.54 68.60 2.03 47.30 15 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 15 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15 14 H -0.28 -13.50 7.11 99.48 0.71 -12.80 15 15 N -0.31 -15.68 12.41 -48.60 -0.60 -16.29 15 16 N -0.13 -5.73 13.17 37.02 0.49 -5.24 15 17 N -0.29 -9.60 3.74 -355.72 -1.33 -10.93 15 18 C 0.07 1.19 11.21 127.77 1.43 2.62 15 19 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 20 H 0.11 1.70 7.15 -2.39 -0.02 1.69 15 21 H 0.08 2.24 7.29 -2.39 -0.02 2.23 15 22 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 15 24 H 0.07 3.82 6.07 -2.39 -0.01 3.80 15 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 15 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 15 27 H 0.11 1.54 8.14 -2.39 -0.02 1.52 15 28 H 0.13 1.24 7.12 -2.39 -0.02 1.22 15 Total: -1.00 -73.42 242.07 5.91 -67.51 By element: Atomic # 1 Polarization: -4.02 SS G_CDS: 1.15 Total: -2.87 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 3.94 Total: -27.30 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.20 Total: -84.64 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.42 5.91 -67.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260401581.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.100 kcal (2) G-P(sol) polarization free energy of solvation -73.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds