Wall clock time and date at job start Mon Mar 30 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39868 * 125.90150 * 2 1 4 4 C 1.35314 * 107.92629 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.13214 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.46816 * 25.00685 * 5 4 3 7 7 C 1.50700 * 109.47092 * 265.00350 * 5 4 3 8 8 H 1.07993 * 120.00378 * 332.55022 * 7 5 4 9 9 C 1.37882 * 119.99741 * 152.55012 * 7 5 4 10 10 N 1.31515 * 119.99838 * 354.00053 * 9 7 5 11 11 Si 1.86797 * 119.99896 * 173.99804 * 9 7 5 12 12 H 1.48504 * 109.47312 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47073 * 120.00197 * 11 9 7 14 14 H 1.48495 * 109.47458 * 240.00144 * 11 9 7 15 15 C 1.52999 * 109.46910 * 145.00626 * 5 4 3 16 16 N 1.46901 * 109.46950 * 294.75202 * 15 5 4 17 17 N 1.34956 * 107.74180 * 0.23401 * 4 3 2 18 18 H 0.96996 * 126.03460 * 179.76998 * 17 4 3 19 19 N 1.30838 * 125.89712 * 180.02562 * 2 1 3 20 20 H 1.08993 * 109.47770 * 89.99423 * 1 2 3 21 21 H 1.09003 * 109.47078 * 209.99700 * 1 2 3 22 22 H 1.08997 * 109.47119 * 329.99053 * 1 2 3 23 23 H 1.08003 * 126.04078 * 0.02562 * 3 2 1 24 24 H 0.96999 * 119.99387 * 179.97438 * 10 9 7 25 25 H 1.09007 * 109.47094 * 174.76272 * 15 5 4 26 26 H 1.08993 * 109.47591 * 54.75449 * 15 5 4 27 27 H 1.00903 * 110.99904 * 173.98022 * 16 15 5 28 28 H 1.00898 * 111.00883 * 297.93541 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 -0.0006 5 6 4.8350 1.5989 -0.0013 6 1 4.5835 2.5664 0.4331 7 6 5.3138 1.7929 -1.4170 8 1 5.1173 1.0362 -2.1620 9 6 6.0028 2.9366 -1.7611 10 7 6.1399 3.9096 -0.8870 11 14 6.7415 3.1038 -3.4686 12 1 6.4486 1.8798 -4.2568 13 1 6.1511 4.2839 -4.1499 14 1 8.2116 3.2810 -3.3568 15 6 5.9414 0.9406 0.8255 16 7 5.5230 0.8657 2.2317 17 7 3.6087 -0.6342 -0.0062 18 1 4.3908 -1.2079 -0.0110 19 7 2.2741 -1.0599 -0.0005 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5140 23 1 1.9923 2.1598 0.0004 24 1 6.6250 4.7140 -1.1290 25 1 6.8534 1.5328 0.7489 26 1 6.1280 -0.0646 0.4479 27 1 6.1926 0.3480 2.7810 28 1 5.3763 1.7874 2.6150 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485535.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:41 Heat of formation + Delta-G solvation = 52.637507 kcal Electronic energy + Delta-G solvation = -12175.680320 eV Core-core repulsion = 10034.384593 eV Total energy + Delta-G solvation = -2141.295727 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.24043 -35.30180 -32.48378 -31.95321 -29.99495 -27.50735 -26.92119 -24.03051 -21.58179 -19.31415 -18.78955 -16.76793 -16.35098 -14.84244 -14.47389 -14.00574 -13.66891 -13.05534 -12.64936 -12.41488 -12.35364 -12.10327 -11.99568 -11.20719 -11.07892 -10.66983 -10.39334 -9.96648 -9.58495 -9.42288 -8.63118 -8.30427 -7.93422 -7.49983 -6.22941 -4.28056 2.94986 3.19777 3.28681 3.33470 3.77691 3.84448 4.31405 5.06457 5.48163 5.51737 5.63682 6.03158 6.05999 6.19090 6.31566 6.51021 6.68326 6.74579 6.96471 7.20327 7.57082 7.63502 7.70458 7.78444 8.08306 8.18202 8.34340 8.67579 8.80161 9.37548 10.85267 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.036293 B = 0.011650 C = 0.009996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.318425 B = 2402.819369 C = 2800.559899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.066 3.934 3 C -0.304 4.304 4 C 0.175 3.825 5 C 0.093 3.907 6 H 0.078 0.922 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.069 3.931 10 N -0.886 5.886 11 Si 0.897 3.103 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.282 1.282 15 C 0.069 3.931 16 N -0.856 5.856 17 N -0.473 5.473 18 H 0.428 0.572 19 N -0.333 5.333 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.133 0.867 24 H 0.264 0.736 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.322 0.678 28 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 -3.591 2.601 5.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C -0.333 4.333 4 C 0.045 3.955 5 C 0.073 3.927 6 H 0.096 0.904 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.134 4.134 10 N -0.524 5.524 11 Si 0.724 3.276 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.208 1.208 15 C -0.062 4.062 16 N -0.384 5.384 17 N -0.179 5.179 18 H 0.271 0.729 19 N -0.158 5.158 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.151 0.849 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.132 0.868 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.680 -5.059 2.332 6.676 hybrid contribution 1.851 1.349 -0.747 2.409 sum -1.829 -3.710 1.585 4.429 Atomic orbital electron populations 1.20041 0.88055 1.02243 1.02027 1.22071 0.96118 0.91506 1.00331 1.20885 0.91522 0.98813 1.22077 1.21776 0.97985 0.83923 0.91816 1.17801 0.85519 0.93415 0.95999 0.90426 1.20937 1.35979 1.04623 0.93783 0.92369 1.24975 0.95816 0.95126 0.97513 1.69923 1.41008 1.06382 1.35044 0.86453 0.78845 0.78347 0.83954 1.19598 1.20717 1.20826 1.22095 0.98836 0.98715 0.86542 1.58957 1.52607 1.22352 1.04458 1.46038 1.06062 1.05677 1.60172 0.72907 1.76992 0.87293 1.22830 1.28686 0.91378 0.91847 0.91096 0.84907 0.92582 0.94771 0.93731 0.86765 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 10.45 36.00 0.38 -0.59 15 2 C 0.07 1.32 7.22 -82.41 -0.59 0.73 15 3 C -0.30 -6.69 10.65 -40.01 -0.43 -7.12 15 4 C 0.17 3.97 5.62 -82.26 -0.46 3.50 15 5 C 0.09 2.23 2.40 -92.93 -0.22 2.00 15 6 H 0.08 2.05 7.45 -51.93 -0.39 1.66 15 7 C -0.51 -13.50 8.29 -34.44 -0.29 -13.78 15 8 H 0.06 1.56 7.82 -52.49 -0.41 1.15 15 9 C 0.07 1.82 5.45 -17.82 -0.10 1.72 15 10 N -0.89 -24.13 12.88 55.43 0.71 -23.41 15 11 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 15 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 15 C 0.07 1.44 5.99 -3.82 -0.02 1.42 15 16 N -0.86 -15.46 9.31 -10.37 -0.10 -15.56 15 17 N -0.47 -10.00 7.13 33.48 0.24 -9.76 15 18 H 0.43 8.15 8.04 -182.61 -1.47 6.68 15 19 N -0.33 -7.10 12.70 33.67 0.43 -6.67 15 20 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.13 2.80 8.06 -52.48 -0.42 2.38 15 24 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.04 0.89 7.21 -51.93 -0.37 0.51 15 27 H 0.32 4.95 9.08 -39.29 -0.36 4.59 15 28 H 0.34 6.00 9.05 -39.29 -0.36 5.64 15 LS Contribution 246.54 15.07 3.72 3.72 Total: -1.00 -28.83 246.54 -6.36 -35.19 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -4.60 Total: 13.10 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -1.74 Total: -12.11 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 1.28 Total: -55.41 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.83 -6.36 -35.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485535.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.830 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds