Wall clock time and date at job start Mon Mar 30 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39863 * 125.90025 * 2 1 4 4 C 1.35314 * 107.92033 * 180.14413 * 3 2 1 5 5 C 1.50701 * 126.12807 * 179.90689 * 4 3 2 6 6 H 1.09008 * 109.46953 * 334.71434 * 5 4 3 7 7 C 1.50697 * 109.47359 * 94.70935 * 5 4 3 8 8 H 1.08008 * 120.00267 * 0.02562 * 7 5 4 9 9 C 1.37879 * 120.00459 * 180.02562 * 7 5 4 10 10 N 1.31516 * 119.99554 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 120.00058 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47143 * 90.00352 * 11 9 7 13 13 H 1.48506 * 109.46852 * 210.00068 * 11 9 7 14 14 H 1.48498 * 109.47606 * 329.99910 * 11 9 7 15 15 C 1.52993 * 109.47270 * 214.71278 * 5 4 3 16 16 N 1.46905 * 109.47039 * 64.99898 * 15 5 4 17 17 N 1.34947 * 107.74472 * 359.63999 * 4 3 2 18 18 H 0.96996 * 126.03480 * 180.25037 * 17 4 3 19 19 N 1.30833 * 125.89549 * 179.74173 * 2 1 3 20 20 H 1.08999 * 109.47044 * 270.23628 * 1 2 3 21 21 H 1.09005 * 109.46944 * 30.22894 * 1 2 3 22 22 H 1.08999 * 109.47253 * 150.23077 * 1 2 3 23 23 H 1.08009 * 126.04087 * 0.02562 * 3 2 1 24 24 H 0.96998 * 119.99988 * 180.02562 * 10 9 7 25 25 H 1.09001 * 109.47393 * 305.00180 * 15 5 4 26 26 H 1.08998 * 109.47408 * 184.99825 * 15 5 4 27 27 H 1.00901 * 110.99869 * 56.04956 * 16 15 5 28 28 H 1.00896 * 110.99543 * 180.02562 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6142 0.7153 -0.0032 5 6 4.8351 1.5988 -0.0064 6 1 4.5835 2.5646 -0.4448 7 6 5.3141 1.7989 1.4083 8 1 4.7874 1.3326 2.2279 9 6 6.4247 2.5773 1.6567 10 7 7.0658 3.1455 0.6588 11 14 7.0187 2.8247 3.4103 12 1 7.9945 1.7604 3.7572 13 1 7.6722 4.1530 3.5288 14 1 5.8620 2.7576 4.3390 15 6 5.9413 0.9371 -0.8306 16 7 5.5203 0.8509 -2.2354 17 7 3.6087 -0.6342 0.0029 18 1 4.3908 -1.2080 0.0058 19 7 2.2742 -1.0599 0.0048 20 1 -0.3633 0.0042 1.0276 21 1 -0.3633 0.8880 -0.5174 22 1 -0.3634 -0.8920 -0.5102 23 1 1.9924 2.1598 0.0004 24 1 7.8473 3.6929 0.8334 25 1 6.1310 -0.0650 -0.4460 26 1 6.8521 1.5318 -0.7601 27 1 5.2765 1.7611 -2.5963 28 1 6.2344 0.4168 -2.8007 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:43 Heat of formation + Delta-G solvation = 54.568315 kcal Electronic energy + Delta-G solvation = -12205.638464 eV Core-core repulsion = 10064.426463 eV Total energy + Delta-G solvation = -2141.212001 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.28386 -35.34495 -32.34693 -31.94682 -30.04888 -27.47182 -26.92480 -24.01617 -21.52893 -19.35603 -18.78886 -16.74836 -16.34204 -14.80173 -14.41705 -14.00461 -13.54658 -13.08780 -12.64516 -12.39198 -12.34949 -12.10758 -11.98596 -11.15392 -11.08138 -10.71964 -10.32551 -9.90619 -9.68687 -9.49694 -8.62617 -8.33225 -7.75983 -7.53957 -6.20391 -4.29674 2.92038 3.20279 3.27758 3.32647 3.72179 3.82623 4.30571 5.07486 5.48181 5.57129 5.63446 6.00103 6.10103 6.19674 6.35211 6.55488 6.72000 6.76942 7.03552 7.33164 7.56471 7.60218 7.76928 7.85459 8.17910 8.25746 8.31592 8.64853 8.74508 9.36586 10.83149 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.038982 B = 0.011520 C = 0.009774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.099680 B = 2429.892757 C = 2864.138178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.065 3.935 3 C -0.308 4.308 4 C 0.173 3.827 5 C 0.102 3.898 6 H 0.052 0.948 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.065 3.935 10 N -0.889 5.889 11 Si 0.899 3.101 12 H -0.280 1.280 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.057 3.943 16 N -0.859 5.859 17 N -0.468 5.468 18 H 0.430 0.570 19 N -0.331 5.331 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.133 0.867 24 H 0.264 0.736 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.333 0.667 28 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.430 -2.481 -2.160 5.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C -0.337 4.337 4 C 0.043 3.957 5 C 0.081 3.919 6 H 0.070 0.930 7 C -0.552 4.552 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.727 3.273 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.197 1.197 15 C -0.074 4.074 16 N -0.386 5.386 17 N -0.174 5.174 18 H 0.273 0.727 19 N -0.156 5.156 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.151 0.849 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.145 0.855 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.872 -4.086 -1.897 6.635 hybrid contribution 1.722 1.424 0.743 2.355 sum -3.150 -2.662 -1.154 4.282 Atomic orbital electron populations 1.20046 0.88007 1.02276 1.02037 1.22072 0.96147 0.91469 1.00407 1.20898 0.91540 0.98834 1.22395 1.21692 0.97725 0.84236 0.92054 1.17677 0.85746 0.92275 0.96167 0.93002 1.21000 1.12036 1.31051 0.91153 0.92121 1.24962 0.96223 0.94917 0.97596 1.69847 1.19818 1.32390 1.30705 0.86457 0.78974 0.77569 0.84311 1.20562 1.21006 1.19662 1.22053 1.00919 0.98761 0.85632 1.59013 1.46919 1.27833 1.04863 1.46032 1.06083 1.05653 1.59615 0.72651 1.77004 0.87301 1.22833 1.28434 0.91372 0.91099 0.91797 0.84917 0.92623 0.94318 0.90795 0.85537 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.45 36.01 0.38 -0.57 15 2 C 0.06 1.29 7.22 -82.41 -0.59 0.69 15 3 C -0.31 -6.61 10.65 -40.02 -0.43 -7.04 15 4 C 0.17 3.91 5.57 -82.26 -0.46 3.45 15 5 C 0.10 2.44 2.30 -92.93 -0.21 2.23 15 6 H 0.05 1.34 8.14 -51.92 -0.42 0.92 15 7 C -0.51 -13.47 8.55 -34.44 -0.29 -13.76 15 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 15 9 C 0.07 1.70 5.29 -17.82 -0.09 1.61 15 10 N -0.89 -23.64 11.30 55.43 0.63 -23.01 15 11 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 15 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 15 C 0.06 1.25 5.86 -3.82 -0.02 1.22 15 16 N -0.86 -16.23 9.34 -10.37 -0.10 -16.33 15 17 N -0.47 -9.96 7.13 33.48 0.24 -9.72 15 18 H 0.43 8.41 8.04 -182.61 -1.47 6.94 15 19 N -0.33 -7.03 12.70 33.67 0.43 -6.60 15 20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.13 2.67 8.06 -52.48 -0.42 2.25 15 24 H 0.26 6.73 8.31 -40.82 -0.34 6.39 15 25 H 0.04 0.84 7.22 -51.93 -0.37 0.46 15 26 H 0.07 1.81 5.96 -51.93 -0.31 1.50 15 27 H 0.33 6.18 8.99 -39.29 -0.35 5.83 15 28 H 0.32 5.30 9.08 -39.29 -0.36 4.95 15 LS Contribution 243.17 15.07 3.66 3.66 Total: -1.00 -28.21 243.17 -6.41 -34.62 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -4.52 Total: 14.10 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.73 Total: -12.17 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 1.20 Total: -55.66 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.21 -6.41 -34.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.189 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds