Wall clock time and date at job start Mon Mar 30 2020 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34305 * 125.78919 * 2 1 4 4 C 1.34300 * 109.47792 * 180.02562 * 3 2 1 5 5 C 1.34509 * 108.42186 * 359.71823 * 4 3 2 6 6 C 1.34511 * 125.78986 * 180.02562 * 2 1 3 7 7 C 1.50699 * 126.58431 * 359.96668 * 6 2 1 8 8 H 1.09000 * 109.46916 * 0.02562 * 7 6 2 9 9 C 1.50706 * 109.46824 * 119.99528 * 7 6 2 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 7 6 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 7 6 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 7 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 C 1.52997 * 109.47592 * 240.00011 * 7 6 2 18 18 N 1.46898 * 109.46971 * 64.99921 * 17 7 6 19 19 H 1.09002 * 109.47252 * 269.95864 * 1 2 3 20 20 H 1.09002 * 109.47151 * 29.96497 * 1 2 3 21 21 H 1.09010 * 109.46555 * 149.96084 * 1 2 3 22 22 H 1.08004 * 125.78866 * 179.97438 * 4 3 2 23 23 H 1.08002 * 126.58436 * 180.26434 * 5 4 3 24 24 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 25 25 H 1.08994 * 109.47065 * 184.99770 * 17 7 6 26 26 H 1.09001 * 109.47096 * 304.99929 * 17 7 6 27 27 H 1.00903 * 111.00197 * 56.04277 * 18 17 7 28 28 H 1.00896 * 111.00046 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5814 0.7123 -0.0006 5 6 3.6309 -0.6319 0.0053 6 6 2.2936 -1.0911 -0.0005 7 6 1.8373 -2.5273 -0.0004 8 1 0.7479 -2.5624 -0.0004 9 6 2.3616 -3.2210 -1.2313 10 1 2.9653 -2.6764 -1.9423 11 6 2.0706 -4.5509 -1.4498 12 7 2.5286 -5.1564 -2.5237 13 14 1.0260 -5.4927 -0.2205 14 1 1.9044 -6.1100 0.8053 15 1 0.0754 -4.5607 0.4377 16 1 0.2675 -6.5559 -0.9273 17 6 2.3708 -3.2320 1.2484 18 7 1.7660 -2.6321 2.4452 19 1 -0.3634 -0.0007 1.0277 20 1 -0.3633 0.8903 -0.5133 21 1 -0.3633 -0.8897 -0.5145 22 1 4.4336 1.3757 -0.0011 23 1 4.5213 -1.2432 0.0105 24 1 2.3242 -6.0921 -2.6772 25 1 2.1163 -4.2909 1.2047 26 1 3.4541 -3.1202 1.2939 27 1 0.7587 -2.6653 2.3966 28 1 2.1029 -3.0803 3.2840 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260501063.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:21 Heat of formation + Delta-G solvation = 11.271546 kcal Electronic energy + Delta-G solvation = -12471.136858 eV Core-core repulsion = 10295.754617 eV Total energy + Delta-G solvation = -2175.382241 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.69701 -35.91289 -32.36983 -32.13260 -31.09944 -28.78440 -25.60334 -23.52684 -21.95223 -20.16961 -18.56984 -16.78184 -16.24755 -15.37854 -14.99488 -14.56256 -13.80499 -13.33690 -13.12471 -12.70140 -12.41813 -12.26942 -11.87952 -11.38634 -11.13241 -10.99761 -10.39512 -10.08286 -9.83339 -9.30877 -8.68344 -8.57909 -7.92485 -7.38436 -6.11938 -4.11136 2.57714 3.18189 3.26437 3.31617 3.63637 3.81623 4.32593 5.13714 5.37462 5.47982 5.73490 5.79982 6.00913 6.05226 6.21554 6.34409 6.37832 6.62909 6.76748 6.91072 6.99382 7.41467 7.43566 7.62668 7.81651 8.01951 8.06294 8.52061 8.95827 9.48571 11.01068 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.039963 B = 0.013584 C = 0.012534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.481242 B = 2060.698299 C = 2233.431576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.052 4.052 3 O -0.190 6.190 4 C -0.074 4.074 5 C -0.185 4.185 6 C -0.093 4.093 7 C 0.077 3.923 8 H 0.032 0.968 9 C -0.505 4.505 10 H 0.077 0.923 11 C 0.069 3.931 12 N -0.897 5.897 13 Si 0.889 3.111 14 H -0.282 1.282 15 H -0.269 1.269 16 H -0.296 1.296 17 C 0.063 3.937 18 N -0.849 5.849 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.085 0.915 22 H 0.190 0.810 23 H 0.138 0.862 24 H 0.264 0.736 25 H 0.015 0.985 26 H 0.068 0.932 27 H 0.330 0.670 28 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 6.674 7.304 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.101 4.101 3 O -0.088 6.088 4 C -0.141 4.141 5 C -0.205 4.205 6 C -0.094 4.094 7 C 0.058 3.942 8 H 0.050 0.950 9 C -0.543 4.543 10 H 0.095 0.905 11 C -0.133 4.133 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.209 1.209 15 H -0.195 1.195 16 H -0.224 1.224 17 C -0.067 4.067 18 N -0.376 5.376 19 H 0.088 0.912 20 H 0.081 0.919 21 H 0.104 0.896 22 H 0.207 0.793 23 H 0.156 0.844 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.087 0.913 27 H 0.141 0.859 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.045 7.459 6.946 10.395 hybrid contribution -0.539 -1.847 0.732 2.059 sum -2.583 5.612 7.677 9.855 Atomic orbital electron populations 1.20117 0.86286 1.03053 1.02285 1.21961 0.93372 0.83974 1.10786 1.83862 1.16624 1.35170 1.73170 1.23636 0.84266 0.95938 1.10258 1.21640 0.98469 0.93978 1.06400 1.20152 0.91929 0.96017 1.01327 1.17765 0.95925 0.87437 0.93093 0.95006 1.20980 1.33084 0.95270 1.04974 0.90462 1.25043 0.95497 0.97516 0.95245 1.69889 1.45462 1.11544 1.26656 0.86825 0.80636 0.79587 0.80933 1.20912 1.19468 1.22354 1.22355 0.99626 0.94631 0.90111 1.58897 1.11271 1.62892 1.04556 0.91249 0.91892 0.89614 0.79319 0.84368 0.92590 0.96779 0.91311 0.85870 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.06 36.01 0.36 -0.63 15 2 C -0.05 -1.06 7.32 -35.63 -0.26 -1.32 15 3 O -0.19 -3.69 10.65 5.71 0.06 -3.63 15 4 C -0.07 -1.33 12.09 29.41 0.36 -0.97 15 5 C -0.19 -3.83 10.42 -39.70 -0.41 -4.24 15 6 C -0.09 -2.06 4.50 -104.74 -0.47 -2.53 15 7 C 0.08 1.83 1.82 -92.92 -0.17 1.66 15 8 H 0.03 0.76 5.86 -51.93 -0.30 0.46 15 9 C -0.50 -14.14 9.02 -34.44 -0.31 -14.45 15 10 H 0.08 2.39 7.98 -52.49 -0.42 1.97 15 11 C 0.07 1.95 5.45 -17.82 -0.10 1.86 15 12 N -0.90 -27.21 13.96 55.43 0.77 -26.44 15 13 Si 0.89 21.57 24.41 -169.99 -4.15 17.42 15 14 H -0.28 -6.71 6.83 56.52 0.39 -6.32 15 15 H -0.27 -6.16 6.53 56.52 0.37 -5.79 15 16 H -0.30 -7.23 7.11 56.52 0.40 -6.82 15 17 C 0.06 1.36 5.63 -3.83 -0.02 1.34 15 18 N -0.85 -15.36 9.34 -10.37 -0.10 -15.46 15 19 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.09 1.43 7.14 -51.92 -0.37 1.06 15 22 H 0.19 2.51 8.06 -52.48 -0.42 2.09 15 23 H 0.14 2.77 8.06 -52.49 -0.42 2.35 15 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 25 H 0.01 0.33 3.22 -51.93 -0.17 0.16 15 26 H 0.07 1.52 7.91 -51.93 -0.41 1.11 15 27 H 0.33 5.63 8.99 -39.29 -0.35 5.28 15 28 H 0.33 5.03 9.08 -39.29 -0.36 4.68 15 LS Contribution 236.02 15.07 3.56 3.56 Total: -1.00 -31.28 236.02 -4.14 -35.42 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.26 Total: 8.43 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.03 Total: -19.29 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.68 Total: -41.90 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: 0.06 Total: -3.63 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.15 Total: 17.42 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.28 -4.14 -35.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501063.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.691 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds