Wall clock time and date at job start Mon Mar 30 2020 02:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30834 * 125.89652 * 2 1 4 4 N 1.40085 * 108.20502 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.04037 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92772 * 359.97438 * 4 3 2 7 7 C 1.50698 * 126.13332 * 179.97438 * 6 4 3 8 8 C 1.35319 * 107.74072 * 359.75647 * 6 4 3 9 9 C 1.50698 * 126.03879 * 180.27586 * 8 6 4 10 10 H 1.09000 * 109.47114 * 345.15854 * 9 8 6 11 11 N 1.46907 * 109.47057 * 225.16332 * 9 8 6 12 12 C 1.50702 * 109.47631 * 105.16150 * 9 8 6 13 13 H 1.08003 * 119.99285 * 0.02562 * 12 9 8 14 14 C 1.37870 * 120.00298 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00053 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99991 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47348 * 90.00119 * 16 14 12 18 18 H 1.48506 * 109.47188 * 209.99722 * 16 14 12 19 19 H 1.48498 * 109.47187 * 329.99434 * 16 14 12 20 20 H 1.09002 * 109.47152 * 90.02599 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.02699 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.02680 * 1 2 3 23 23 H 1.08996 * 109.47312 * 89.97269 * 7 6 4 24 24 H 1.08996 * 109.47322 * 209.98101 * 7 6 4 25 25 H 1.09008 * 109.46551 * 329.97959 * 7 6 4 26 26 H 1.00901 * 110.99791 * 299.99697 * 11 9 8 27 27 H 1.00894 * 110.99980 * 63.94730 * 11 9 8 28 28 H 0.97002 * 120.00271 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 1 4.3908 1.2080 0.0011 6 6 3.6143 -0.7153 0.0015 7 6 4.8351 -1.5989 0.0019 8 6 2.3272 -1.1330 0.0070 9 6 1.8600 -2.5657 0.0158 10 1 2.6911 -3.2205 -0.2461 11 7 0.7772 -2.7336 -0.9628 12 6 1.3544 -2.9209 1.3903 13 1 1.3695 -2.1828 2.1785 14 6 0.8716 -4.1877 1.6412 15 7 0.8528 -5.0864 0.6811 16 14 0.2443 -4.6277 3.3447 17 1 -1.2073 -4.3270 3.4307 18 1 0.4656 -6.0747 3.5953 19 1 0.9760 -3.8316 4.3626 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 0.8902 0.5134 22 1 -0.3633 -0.8898 0.5143 23 1 5.1299 -1.8109 1.0296 24 1 4.6074 -2.5334 -0.5110 25 1 5.6510 -1.0914 -0.5129 26 1 -0.0057 -2.1367 -0.7418 27 1 1.1079 -2.5637 -1.9007 28 1 0.5128 -5.9776 0.8575 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260505713.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:49 Heat of formation + Delta-G solvation = 65.187646 kcal Electronic energy + Delta-G solvation = -12449.099388 eV Core-core repulsion = 10308.347876 eV Total energy + Delta-G solvation = -2140.751512 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.60736 -34.65809 -32.70395 -31.56963 -29.74351 -27.65017 -26.34078 -25.44846 -21.81317 -19.44811 -18.51691 -16.73954 -16.01260 -14.43555 -14.40279 -14.18819 -13.17848 -12.87328 -12.77176 -12.45929 -12.16551 -11.90162 -11.79120 -11.32335 -11.04445 -10.76340 -10.62114 -10.05718 -9.66211 -9.05139 -8.56387 -8.32828 -7.52403 -6.88018 -5.77795 -3.90708 2.51470 3.38352 3.45107 3.46337 3.49075 3.57628 4.56902 5.31610 5.39590 5.48178 5.58912 5.94270 5.99223 6.14618 6.31377 6.34169 6.46972 6.56690 6.79088 6.93590 7.46965 7.63692 7.94704 8.01588 8.34818 8.39644 8.79367 9.16964 9.29118 9.77001 11.26324 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.039011 B = 0.012681 C = 0.011779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.580109 B = 2207.575854 C = 2376.602333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.081 3.919 3 N -0.317 5.317 4 N -0.492 5.492 5 H 0.426 0.574 6 C 0.060 3.940 7 C -0.082 4.082 8 C -0.217 4.217 9 C 0.289 3.711 10 H 0.042 0.958 11 N -0.812 5.812 12 C -0.522 4.522 13 H 0.050 0.950 14 C 0.082 3.918 15 N -0.849 5.849 16 Si 0.879 3.121 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.277 1.277 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.097 0.903 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.319 0.681 27 H 0.294 0.706 28 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.152 6.794 -1.979 8.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 N -0.142 5.142 4 N -0.202 5.202 5 H 0.268 0.732 6 C -0.067 4.067 7 C -0.140 4.140 8 C -0.230 4.230 9 C 0.178 3.822 10 H 0.059 0.941 11 N -0.339 5.339 12 C -0.561 4.561 13 H 0.068 0.932 14 C -0.124 4.124 15 N -0.484 5.484 16 Si 0.707 3.293 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.202 1.202 20 H 0.086 0.914 21 H 0.080 0.920 22 H 0.115 0.885 23 H 0.094 0.906 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.132 0.868 27 H 0.104 0.896 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.076 7.050 -1.781 8.336 hybrid contribution 0.299 0.293 0.831 0.930 sum 4.375 7.343 -0.951 8.600 Atomic orbital electron populations 1.20300 0.87446 1.03704 1.02109 1.22140 0.96679 0.90558 0.99152 1.77052 0.86775 1.22866 1.27511 1.46025 1.06674 1.04888 1.62565 0.73207 1.20887 0.97456 0.84247 1.04096 1.20331 0.92249 0.98483 1.02984 1.21749 0.90525 1.00552 1.10142 1.17512 0.90368 0.82345 0.91992 0.94073 1.59350 1.10122 1.61735 1.02702 1.20871 1.44123 0.96739 0.94406 0.93196 1.24945 0.95268 0.96507 0.95667 1.70103 1.43911 1.03586 1.30849 0.86843 0.79350 0.77415 0.85723 1.20768 1.21418 1.20226 0.91443 0.92003 0.88460 0.90640 0.89426 0.92542 0.86756 0.89634 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 8.75 36.01 0.31 -1.06 15 2 C 0.08 1.68 7.15 -82.41 -0.59 1.09 15 3 N -0.32 -6.36 12.70 33.67 0.43 -5.94 15 4 N -0.49 -8.60 7.36 33.48 0.25 -8.36 15 5 H 0.43 5.72 8.96 -182.61 -1.64 4.09 15 6 C 0.06 1.13 7.21 -82.26 -0.59 0.54 15 7 C -0.08 -1.26 10.16 36.00 0.37 -0.89 15 8 C -0.22 -4.74 4.98 -105.05 -0.52 -5.26 15 9 C 0.29 7.10 2.78 -70.01 -0.19 6.91 15 10 H 0.04 1.10 6.82 -51.93 -0.35 0.74 15 11 N -0.81 -19.09 8.48 -6.65 -0.06 -19.15 15 12 C -0.52 -14.25 8.28 -34.44 -0.29 -14.53 15 13 H 0.05 1.40 7.74 -52.48 -0.41 0.99 15 14 C 0.08 2.27 5.39 -17.82 -0.10 2.18 15 15 N -0.85 -24.49 12.77 55.43 0.71 -23.78 15 16 Si 0.88 21.30 29.54 -169.99 -5.02 16.27 15 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 15 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 20 H 0.07 1.07 8.05 -51.93 -0.42 0.65 15 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.10 1.91 6.34 -51.93 -0.33 1.58 15 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.09 1.42 7.02 -51.93 -0.36 1.06 15 25 H 0.06 0.67 8.14 -51.92 -0.42 0.25 15 26 H 0.32 7.07 5.57 -39.29 -0.22 6.85 15 27 H 0.29 6.31 9.06 -39.29 -0.36 5.96 15 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 15 LS Contribution 239.14 15.07 3.60 3.60 Total: -1.00 -31.30 239.14 -6.18 -37.48 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -4.49 Total: 10.90 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.60 Total: -11.03 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 1.33 Total: -57.22 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.30 -6.18 -37.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260505713.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.668 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds