Wall clock time and date at job start Mon Mar 30 2020 02:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47065 * 2 1 4 4 C 1.52998 * 109.47525 * 120.00173 * 2 1 3 5 5 H 1.09008 * 109.46869 * 298.64410 * 4 2 1 6 6 C 1.50700 * 109.47185 * 58.63680 * 4 2 1 7 7 H 1.08002 * 119.99666 * 31.45124 * 6 4 2 8 8 C 1.37868 * 120.00109 * 211.44659 * 6 4 2 9 9 N 1.31510 * 120.00369 * 5.54258 * 8 6 4 10 10 Si 1.86804 * 120.00029 * 185.53692 * 8 6 4 11 11 H 1.48507 * 109.46970 * 90.00056 * 10 8 6 12 12 H 1.48493 * 109.47385 * 210.00357 * 10 8 6 13 13 H 1.48503 * 109.47192 * 330.00301 * 10 8 6 14 14 C 1.50696 * 109.47323 * 178.64174 * 4 2 1 15 15 C 1.41382 * 128.00664 * 300.11529 * 14 4 2 16 16 N 1.30172 * 106.39470 * 180.26616 * 15 14 4 17 17 O 1.20924 * 111.60575 * 359.76803 * 16 15 14 18 18 C 1.34041 * 111.56639 * 359.97438 * 17 16 15 19 19 H 1.09000 * 109.46839 * 293.68672 * 1 2 3 20 20 H 1.08994 * 109.47438 * 53.69326 * 1 2 3 21 21 H 1.09003 * 109.47060 * 173.69378 * 1 2 3 22 22 H 1.09002 * 109.47274 * 240.00563 * 2 1 3 23 23 H 1.08998 * 109.47095 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47182 * 300.00402 * 3 2 1 25 25 H 1.09002 * 109.46615 * 60.00159 * 3 2 1 26 26 H 0.97000 * 120.00077 * 179.97438 * 9 8 6 27 27 H 1.07997 * 126.80190 * 359.97438 * 15 14 4 28 28 H 1.08001 * 126.77217 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6968 -0.1935 2.1391 6 6 1.5104 -2.1320 1.2662 7 1 1.3322 -2.6531 0.3371 8 6 1.2535 -2.7574 2.4677 9 7 1.3660 -2.0887 3.5945 10 14 0.7453 -4.5548 2.4952 11 1 1.9555 -5.4099 2.5929 12 1 -0.1323 -4.8032 3.6670 13 1 0.0087 -4.8801 1.2474 14 6 3.5467 -0.7505 1.2324 15 6 4.3954 -1.3298 0.2614 16 7 5.6146 -1.1162 0.6646 17 8 5.6379 -0.5047 1.7076 18 6 4.4013 -0.2255 2.1428 19 1 -0.3633 0.4129 0.9411 20 1 -0.3634 0.6084 -0.8281 21 1 -0.3633 -1.0215 -0.1129 22 1 1.8934 -0.5137 -0.8900 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.1848 -2.5287 4.4397 27 1 4.0923 -1.8508 -0.6347 28 1 4.1382 0.3081 3.0442 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260600110.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:35 Heat of formation + Delta-G solvation = 23.393668 kcal Electronic energy + Delta-G solvation = -12508.093763 eV Core-core repulsion = 10333.237176 eV Total energy + Delta-G solvation = -2174.856586 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.53884 -38.06346 -34.29846 -34.12236 -32.30890 -29.19006 -27.72616 -25.44017 -23.61622 -22.15273 -20.49709 -18.76233 -18.22046 -18.12814 -16.53817 -15.74442 -15.19378 -14.81344 -14.35226 -13.92655 -13.56626 -13.31941 -12.91097 -12.84639 -12.54873 -12.30822 -12.02458 -11.81883 -11.53480 -11.32346 -10.86679 -10.82228 -10.55184 -9.75765 -8.12614 -6.18260 0.86902 1.39002 1.43170 1.49830 1.74792 2.43674 2.66616 3.22028 3.69728 4.22098 4.35820 4.44888 4.48643 4.70033 4.93294 5.00419 5.05822 5.14779 5.21554 5.22846 5.48808 5.57422 5.58820 5.69659 5.86153 5.95006 6.37012 6.94263 7.47216 7.54621 8.95573 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.016247 C = 0.012070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.423518 B = 1722.995207 C = 2319.193210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 C -0.135 4.135 4 C 0.107 3.893 5 H 0.041 0.959 6 C -0.507 4.507 7 H 0.054 0.946 8 C 0.022 3.978 9 N -0.915 5.915 10 Si 0.938 3.062 11 H -0.286 1.286 12 H -0.285 1.285 13 H -0.265 1.265 14 C -0.147 4.147 15 C -0.014 4.014 16 N -0.402 5.402 17 O 0.076 5.924 18 C -0.095 4.095 19 H 0.037 0.963 20 H 0.059 0.941 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.260 0.740 27 H 0.190 0.810 28 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 4.360 -4.251 6.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 C -0.193 4.193 4 C 0.088 3.912 5 H 0.059 0.941 6 C -0.545 4.545 7 H 0.072 0.928 8 C -0.178 4.178 9 N -0.555 5.555 10 Si 0.765 3.235 11 H -0.213 1.213 12 H -0.211 1.211 13 H -0.189 1.189 14 C -0.151 4.151 15 C -0.192 4.192 16 N -0.109 5.109 17 O 0.011 5.989 18 C -0.175 4.175 19 H 0.056 0.944 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.207 0.793 28 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.882 4.038 -4.539 6.360 hybrid contribution -1.091 -1.155 0.586 1.693 sum 0.791 2.882 -3.953 4.956 Atomic orbital electron populations 1.21562 0.95180 1.00934 1.00215 1.21085 0.95935 0.95278 0.97773 1.21779 0.99934 0.96116 1.01427 1.17357 0.83599 0.95215 0.95068 0.94052 1.21252 1.41890 0.99368 0.91980 0.92810 1.25576 0.95477 1.00876 0.95823 1.69986 1.50463 1.37105 0.97896 0.85858 0.77906 0.81862 0.77882 1.21251 1.21094 1.18930 1.22326 1.00482 0.98310 0.94010 1.25046 0.88120 1.02935 1.03057 1.73685 1.23462 1.13954 0.99756 1.84622 1.30553 1.54749 1.28930 1.26011 0.82264 1.06107 1.03108 0.94415 0.92201 0.93716 0.92903 0.94138 0.91859 0.93243 0.93043 0.79259 0.75939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.35 8.80 71.98 0.63 -3.72 15 2 C -0.08 -3.08 2.44 -10.79 -0.03 -3.11 15 3 C -0.14 -4.33 8.96 71.98 0.65 -3.69 15 4 C 0.11 4.83 1.91 -12.29 -0.02 4.80 15 5 H 0.04 2.09 7.33 -2.38 -0.02 2.07 15 6 C -0.51 -25.63 7.02 25.60 0.18 -25.45 15 7 H 0.05 2.70 7.82 -2.91 -0.02 2.68 15 8 C 0.02 1.16 5.45 84.65 0.46 1.62 15 9 N -0.92 -50.39 12.82 21.44 0.27 -50.11 15 10 Si 0.94 42.41 29.54 68.60 2.03 44.44 15 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 15 12 H -0.29 -12.75 7.11 99.48 0.71 -12.05 15 13 H -0.26 -11.52 7.11 99.48 0.71 -10.82 15 14 C -0.15 -6.29 3.72 -19.74 -0.07 -6.36 15 15 C -0.01 -0.57 11.94 85.71 1.02 0.46 15 16 N -0.40 -16.55 12.07 -59.27 -0.72 -17.26 15 17 O 0.08 2.99 11.20 71.62 0.80 3.79 15 18 C -0.09 -3.72 12.26 67.18 0.82 -2.89 15 19 H 0.04 1.40 8.14 -2.39 -0.02 1.38 15 20 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.04 1.72 7.42 -2.39 -0.02 1.70 15 22 H 0.05 1.96 8.08 -2.39 -0.02 1.94 15 23 H 0.04 1.32 7.26 -2.39 -0.02 1.30 15 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.26 13.84 8.31 -92.71 -0.77 13.07 15 27 H 0.19 6.98 8.06 -2.91 -0.02 6.95 15 28 H 0.22 7.60 8.06 -2.91 -0.02 7.58 15 Total: -1.00 -56.25 244.35 7.16 -49.08 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.13 Total: 8.39 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 3.64 Total: -38.33 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -0.44 Total: -67.37 kcal Atomic # 8 Polarization: 2.99 SS G_CDS: 0.80 Total: 3.79 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -56.25 7.16 -49.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600110.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.477 kcal (2) G-P(sol) polarization free energy of solvation -56.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds