Wall clock time and date at job start Mon Mar 30 2020 02:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47138 * 2 1 4 4 H 1.09004 * 109.47042 * 305.59125 * 3 2 1 5 5 C 1.50701 * 109.47064 * 65.58747 * 3 2 1 6 6 H 1.08007 * 119.99920 * 35.39805 * 5 3 2 7 7 C 1.37876 * 120.00437 * 215.12662 * 5 3 2 8 8 N 1.31507 * 120.00583 * 184.57178 * 7 5 3 9 9 Si 1.86801 * 119.99562 * 4.56756 * 7 5 3 10 10 H 1.48500 * 109.47304 * 91.43149 * 9 7 5 11 11 H 1.48500 * 109.47279 * 211.42868 * 9 7 5 12 12 H 1.48496 * 109.47418 * 331.42904 * 9 7 5 13 13 C 1.50698 * 109.47559 * 185.58783 * 3 2 1 14 14 C 1.35450 * 126.77450 * 119.70912 * 13 3 2 15 15 C 1.41386 * 103.98301 * 179.91364 * 14 13 3 16 16 C 1.50697 * 126.80069 * 180.16764 * 15 14 13 17 17 N 1.30174 * 106.39341 * 0.35808 * 15 14 13 18 18 O 1.20916 * 111.60848 * 359.77072 * 17 15 14 19 19 H 1.08997 * 109.46890 * 174.50467 * 1 2 3 20 20 H 1.09002 * 109.47038 * 294.49706 * 1 2 3 21 21 H 1.08997 * 109.47408 * 54.50668 * 1 2 3 22 22 H 1.09004 * 109.47009 * 240.00409 * 2 1 3 23 23 H 1.09004 * 109.47302 * 119.99978 * 2 1 3 24 24 H 0.97000 * 120.00594 * 179.97438 * 8 7 5 25 25 H 1.07995 * 128.01367 * 0.02562 * 14 13 3 26 26 H 1.09005 * 109.47266 * 270.25078 * 16 15 14 27 27 H 1.08997 * 109.47271 * 30.25190 * 16 15 14 28 28 H 1.09004 * 109.47158 * 150.25394 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 1.6538 2.1118 1.2938 6 1 1.6419 1.5445 2.2128 7 6 1.3210 3.4498 1.3054 8 7 1.0715 4.0556 2.4456 9 14 1.2247 4.4021 -0.2988 10 1 -0.1631 4.3477 -0.8242 11 1 1.6079 5.8166 -0.0585 12 1 2.1528 3.7992 -1.2889 13 6 3.5406 1.4449 -0.1383 14 6 4.2623 2.0141 -1.1332 15 6 5.6037 1.7312 -0.7871 16 6 6.8378 2.1363 -1.5512 17 7 5.5612 1.0479 0.3201 18 8 4.4243 0.8789 0.6956 19 1 -0.3633 -1.0229 -0.0984 20 1 -0.3633 0.4261 0.9352 21 1 -0.3634 0.5966 -0.8367 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8900 24 1 0.8378 4.9970 2.4538 25 1 3.8978 2.5596 -1.9910 26 1 7.0870 1.3614 -2.2762 27 1 6.6505 3.0750 -2.0726 28 1 7.6686 2.2655 -0.8575 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260622605.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:55 Heat of formation + Delta-G solvation = 19.256303 kcal Electronic energy + Delta-G solvation = -12366.150309 eV Core-core repulsion = 10191.114313 eV Total energy + Delta-G solvation = -2175.035996 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.60345 -37.29723 -35.50990 -34.13854 -32.30578 -29.41810 -29.07856 -25.60723 -23.80045 -22.42751 -20.50663 -19.17494 -18.25876 -17.79784 -16.42710 -15.72079 -15.30045 -14.67540 -14.45942 -14.11846 -13.89687 -13.84430 -13.47653 -13.04537 -12.80018 -12.32986 -12.09436 -12.02014 -11.71601 -11.54501 -11.10482 -10.83388 -10.76506 -9.98555 -8.34224 -6.42117 0.76153 1.34342 1.36640 1.45557 1.47601 2.31901 2.45463 3.04657 3.46698 3.77062 4.18816 4.35897 4.49863 4.51548 4.62927 4.72964 4.81189 4.87551 5.00480 5.09140 5.17484 5.25662 5.38672 5.43994 5.55068 5.69107 6.23209 6.66553 7.23724 7.49527 8.81528 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.030633 B = 0.015123 C = 0.012425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.831444 B = 1851.039580 C = 2253.016750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C 0.078 3.922 4 H 0.081 0.919 5 C -0.509 4.509 6 H 0.035 0.965 7 C 0.017 3.983 8 N -0.940 5.940 9 Si 0.929 3.071 10 H -0.256 1.256 11 H -0.292 1.292 12 H -0.227 1.227 13 C 0.017 3.983 14 C -0.283 4.283 15 C 0.015 3.985 16 C -0.068 4.068 17 N -0.418 5.418 18 O 0.061 5.939 19 H 0.068 0.932 20 H 0.040 0.960 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.044 0.956 24 H 0.268 0.732 25 H 0.183 0.817 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.130 -3.295 -11.874 12.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C 0.058 3.942 4 H 0.099 0.901 5 C -0.546 4.546 6 H 0.054 0.946 7 C -0.181 4.181 8 N -0.579 5.579 9 Si 0.752 3.248 10 H -0.181 1.181 11 H -0.219 1.219 12 H -0.150 1.150 13 C -0.047 4.047 14 C -0.305 4.305 15 C -0.145 4.145 16 C -0.125 4.125 17 N -0.131 5.131 18 O 0.004 5.996 19 H 0.087 0.913 20 H 0.059 0.941 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.201 0.799 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.969 -3.695 -10.963 12.590 hybrid contribution -0.560 1.183 -0.305 1.344 sum 4.409 -2.512 -11.268 12.358 Atomic orbital electron populations 1.21588 0.94470 1.01363 1.01713 1.21446 0.97255 0.94733 1.00713 1.18209 0.81214 0.97019 0.97721 0.90109 1.20982 1.45182 0.95030 0.93412 0.94618 1.26030 0.93732 0.98452 0.99920 1.70050 1.47875 1.11762 1.28176 0.85987 0.80607 0.77584 0.80645 1.18062 1.21863 1.15022 1.26069 0.96926 0.93691 0.88039 1.22694 0.91992 1.11271 1.04502 1.24272 0.98365 0.98104 0.93751 1.20287 0.90203 1.03302 0.98698 1.73743 1.00624 1.22339 1.16442 1.84715 1.10954 1.59342 1.44542 0.91318 0.94063 0.92468 0.91550 0.93682 0.92310 0.79936 0.88359 0.88315 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.64 71.98 0.69 -3.86 15 2 C -0.10 -3.91 5.37 30.59 0.16 -3.74 15 3 C 0.08 3.44 1.83 -12.29 -0.02 3.42 15 4 H 0.08 3.31 5.13 -2.38 -0.01 3.30 15 5 C -0.51 -27.83 7.95 25.60 0.20 -27.62 15 6 H 0.04 2.22 8.06 -2.91 -0.02 2.20 15 7 C 0.02 0.98 5.47 84.66 0.46 1.44 15 8 N -0.94 -57.44 13.96 21.45 0.30 -57.14 15 9 Si 0.93 40.80 27.19 68.60 1.87 42.67 15 10 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 15 12 H -0.23 -8.76 5.59 99.48 0.56 -8.21 15 13 C 0.02 0.73 5.98 25.04 0.15 0.88 15 14 C -0.28 -10.68 10.58 22.40 0.24 -10.44 15 15 C 0.01 0.53 7.33 43.58 0.32 0.85 15 16 C -0.07 -1.62 10.47 71.23 0.75 -0.88 15 17 N -0.42 -18.05 12.07 -49.56 -0.60 -18.65 15 18 O 0.06 2.85 11.20 71.62 0.80 3.65 15 19 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 20 H 0.04 1.61 7.58 -2.39 -0.02 1.59 15 21 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.07 2.14 8.14 -2.38 -0.02 2.12 15 23 H 0.04 1.81 8.14 -2.39 -0.02 1.79 15 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 25 H 0.18 5.78 7.60 -2.91 -0.02 5.76 15 26 H 0.10 1.90 8.14 -2.38 -0.02 1.88 15 27 H 0.10 1.92 8.14 -2.39 -0.02 1.90 15 28 H 0.08 1.76 8.14 -2.38 -0.02 1.74 15 Total: -1.00 -65.75 242.51 6.31 -59.44 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.99 Total: 9.99 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 2.95 Total: -39.96 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -0.30 Total: -75.79 kcal Atomic # 8 Polarization: 2.85 SS G_CDS: 0.80 Total: 3.65 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.87 Total: 42.67 kcal Total: -65.75 6.31 -59.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622605.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.693 kcal (2) G-P(sol) polarization free energy of solvation -65.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds