Wall clock time and date at job start Mon Mar 30 2020 02:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47020 * 2 1 4 4 H 1.09001 * 109.47000 * 304.99210 * 3 2 1 5 5 C 1.50706 * 109.46859 * 185.00129 * 3 2 1 6 6 H 1.08000 * 119.99302 * 239.99789 * 5 3 2 7 7 C 1.37871 * 120.00436 * 59.72322 * 5 3 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47426 * 119.99743 * 9 7 5 12 12 H 1.48501 * 109.46833 * 239.99986 * 9 7 5 13 13 C 1.50696 * 109.47505 * 64.99888 * 3 2 1 14 14 C 1.34329 * 126.44279 * 239.71296 * 13 3 2 15 15 N 1.34479 * 107.66994 * 179.87430 * 14 13 3 16 16 C 1.30259 * 108.69888 * 0.39657 * 15 14 13 17 17 C 1.50699 * 125.62315 * 179.77999 * 16 15 14 18 18 O 1.33968 * 108.76077 * 359.75186 * 16 15 14 19 19 H 1.08995 * 109.47136 * 300.00531 * 1 2 3 20 20 H 1.09001 * 109.47218 * 60.00434 * 1 2 3 21 21 H 1.08994 * 109.47253 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47136 * 239.99469 * 2 1 3 23 23 H 1.08998 * 109.46713 * 119.99549 * 2 1 3 24 24 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 25 25 H 1.07996 * 126.16682 * 359.97438 * 14 13 3 26 26 H 1.08997 * 109.46857 * 269.97454 * 17 16 15 27 27 H 1.09003 * 109.46855 * 29.96686 * 17 16 15 28 28 H 1.08993 * 109.47396 * 149.96667 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1436 0.8733 -1.2252 8 7 3.4067 0.3267 -2.1675 9 14 6.0053 0.8749 -1.3784 10 1 6.5987 1.5460 -0.1941 11 1 6.4970 -0.5243 -1.4531 12 1 6.3999 1.6048 -2.6099 13 6 1.6413 2.1163 1.2876 14 6 0.8766 3.2138 1.4104 15 7 0.7592 3.4849 2.7223 16 6 1.4326 2.5952 3.3945 17 6 1.5630 2.5423 4.8949 18 8 1.9897 1.7346 2.5321 19 1 -0.3633 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.8299 -0.0754 -2.9422 25 1 0.4342 3.7761 0.6014 26 1 2.4314 3.1234 5.2048 27 1 0.6654 2.9583 5.3524 28 1 1.6863 1.5070 5.2126 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260644255.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:05 Heat of formation + Delta-G solvation = 0.665963 kcal Electronic energy + Delta-G solvation = -12304.448782 eV Core-core repulsion = 10128.606649 eV Total energy + Delta-G solvation = -2175.842133 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.47425 -35.25735 -33.89141 -31.96491 -31.07935 -28.33760 -25.96367 -23.24023 -21.51059 -21.00055 -19.39817 -16.67491 -15.98166 -15.72820 -14.86240 -13.92673 -13.39598 -13.08880 -12.94935 -12.63929 -12.31602 -12.01442 -11.75362 -11.30061 -10.95017 -10.76566 -10.50827 -10.24916 -10.16948 -9.81725 -9.46249 -9.21862 -8.50596 -7.70287 -6.14688 -4.23163 2.36563 3.23358 3.31415 3.36112 3.46205 3.54744 4.34025 4.73635 5.15309 5.50404 5.62312 5.73863 5.97581 6.03565 6.17804 6.21715 6.41003 6.51603 6.79883 6.88624 6.99694 7.12292 7.17183 7.54873 7.71958 7.91165 8.16976 8.52502 8.77800 9.42138 10.90056 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.038764 B = 0.011884 C = 0.010111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.141250 B = 2355.540635 C = 2768.465282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.119 3.881 4 H 0.062 0.938 5 C -0.517 4.517 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.039 3.961 14 C -0.096 4.096 15 N -0.484 5.484 16 C 0.135 3.865 17 C -0.046 4.046 18 O -0.195 6.195 19 H 0.033 0.967 20 H 0.047 0.953 21 H 0.037 0.963 22 H 0.104 0.896 23 H 0.037 0.963 24 H 0.264 0.736 25 H 0.173 0.827 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 0.858 7.002 7.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.100 3.900 4 H 0.080 0.920 5 C -0.555 4.555 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.015 4.015 14 C -0.234 4.234 15 N -0.215 5.215 16 C -0.072 4.072 17 C -0.103 4.103 18 O -0.081 6.081 19 H 0.052 0.948 20 H 0.067 0.933 21 H 0.056 0.944 22 H 0.122 0.878 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.190 0.810 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.234 1.215 7.134 7.926 hybrid contribution 1.300 -0.460 -0.548 1.484 sum -1.933 0.756 6.586 6.906 Atomic orbital electron populations 1.21852 0.98895 0.99593 1.00146 1.21639 0.91924 0.98772 1.03244 1.17745 0.96790 0.92260 0.83186 0.91988 1.21051 0.90018 1.38387 1.05995 0.92305 1.24926 0.98676 0.94723 0.95351 1.69857 1.35084 1.37867 1.09709 0.86414 0.84950 0.77865 0.78146 1.19713 1.20770 1.20773 1.24752 0.95281 0.96226 0.85210 1.22851 1.07066 1.00227 0.93243 1.70204 1.21021 1.25588 1.04689 1.25915 0.97245 0.88757 0.95243 1.20014 1.03854 1.03714 0.82733 1.84411 1.58979 1.48267 1.16484 0.94785 0.93349 0.94366 0.87752 0.94367 0.92621 0.80981 0.89954 0.89122 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.73 37.16 0.36 -2.59 15 2 C -0.12 -2.77 5.23 -26.73 -0.14 -2.91 15 3 C 0.12 2.95 2.20 -92.92 -0.20 2.75 15 4 H 0.06 1.60 8.11 -51.93 -0.42 1.18 15 5 C -0.52 -14.11 8.55 -34.44 -0.29 -14.40 15 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 15 8 N -0.89 -24.25 11.27 55.43 0.62 -23.63 15 9 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 15 10 H -0.27 -6.37 7.11 56.52 0.40 -5.96 15 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 13 C 0.04 0.91 4.81 -35.69 -0.17 0.74 15 14 C -0.10 -2.07 11.79 -17.77 -0.21 -2.28 15 15 N -0.48 -10.10 11.29 -11.10 -0.13 -10.23 15 16 C 0.13 2.61 8.34 -12.95 -0.11 2.50 15 17 C -0.05 -0.59 10.51 36.01 0.38 -0.21 15 18 O -0.20 -4.39 10.78 5.36 0.06 -4.34 15 19 H 0.03 0.67 7.38 -51.93 -0.38 0.28 15 20 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.10 2.68 5.93 -51.93 -0.31 2.37 15 23 H 0.04 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 25 H 0.17 3.30 8.06 -52.49 -0.42 2.88 15 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 245.01 15.07 3.69 3.69 Total: -1.00 -29.33 245.01 -4.87 -34.19 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.61 Total: -0.86 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.48 Total: -14.74 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.50 Total: -33.86 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: 0.06 Total: -4.34 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.33 -4.87 -34.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260644255.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.859 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds