Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41376 * 126.79981 * 2 1 4 4 C 1.35450 * 103.98541 * 180.09860 * 3 2 1 5 5 C 1.50706 * 126.77503 * 179.90879 * 4 3 2 6 6 C 1.52997 * 109.47238 * 299.70695 * 5 4 3 7 7 C 1.52992 * 109.47161 * 59.71231 * 5 4 3 8 8 C 1.50699 * 109.46817 * 179.70865 * 5 4 3 9 9 H 1.08003 * 119.99962 * 0.02562 * 8 5 4 10 10 C 1.37874 * 120.00270 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99500 * 0.02562 * 10 8 5 12 12 Si 1.86803 * 120.00390 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.46921 * 60.00425 * 12 10 8 14 14 H 1.48496 * 109.46933 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46946 * 300.00108 * 12 10 8 16 16 O 1.34036 * 106.44356 * 359.64741 * 4 3 2 17 17 N 1.20915 * 111.57168 * 0.23590 * 16 4 3 18 18 H 1.09008 * 109.46520 * 270.28817 * 1 2 3 19 19 H 1.08995 * 109.47023 * 30.28653 * 1 2 3 20 20 H 1.09000 * 109.47192 * 150.29228 * 1 2 3 21 21 H 1.08003 * 128.00932 * 0.02562 * 3 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 23 23 H 1.09001 * 109.46832 * 60.00314 * 6 5 4 24 24 H 1.09004 * 109.47261 * 300.00295 * 6 5 4 25 25 H 1.09001 * 109.47066 * 299.99783 * 7 5 4 26 26 H 1.08996 * 109.47747 * 59.99449 * 7 5 4 27 27 H 1.09002 * 109.47103 * 179.97438 * 7 5 4 28 28 H 0.97002 * 119.99804 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 -0.0023 5 6 4.9022 1.3697 -0.0052 6 6 4.9777 2.2438 -1.2586 7 6 4.9763 2.2558 1.2398 8 6 6.0546 0.3986 0.0002 9 1 5.8648 -0.6646 0.0048 10 6 7.3512 0.8674 -0.0019 11 7 7.5822 2.1621 -0.0080 12 14 8.7796 -0.3363 0.0055 13 1 8.7076 -1.1973 -1.2023 14 1 10.0603 0.4153 0.0025 15 1 8.7065 -1.1838 1.2227 16 8 3.4538 -0.7252 0.0045 17 7 2.2869 -1.0423 0.0057 18 1 -0.3633 0.0052 1.0278 19 1 -0.3633 0.8874 -0.5183 20 1 -0.3633 -0.8926 -0.5093 21 1 2.0709 2.1743 0.0004 22 1 5.9180 2.7952 -1.2609 23 1 4.1442 2.9462 -1.2624 24 1 4.9249 1.6125 -2.1456 25 1 4.1427 2.9582 1.2360 26 1 4.9224 1.6331 2.1328 27 1 5.9165 2.8072 1.2379 28 1 8.4944 2.4919 -0.0098 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260789288.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = 29.779642 kcal Electronic energy + Delta-G solvation = -12461.459160 eV Core-core repulsion = 10286.879491 eV Total energy + Delta-G solvation = -2174.579670 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.60142 -37.77283 -35.50393 -33.72523 -30.93983 -29.42315 -27.64630 -27.24418 -24.12482 -22.66943 -20.48467 -18.38024 -18.27319 -17.54681 -16.56273 -15.35619 -14.80291 -14.43665 -14.13776 -13.83986 -13.76169 -13.58478 -13.21332 -13.01994 -12.66408 -12.49998 -12.27680 -11.91111 -11.81297 -11.67370 -10.83196 -10.80270 -10.44810 -9.99895 -8.07080 -6.22786 0.76170 1.45104 1.46096 1.48844 1.53705 2.44795 2.49369 3.18005 3.48599 3.80148 4.37174 4.56806 4.63308 4.74487 4.77150 4.84361 4.90751 4.98349 5.08852 5.16265 5.30205 5.43163 5.53367 5.65937 5.98478 6.07685 6.32093 6.77214 7.43790 7.53198 8.92858 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.056193 B = 0.011293 C = 0.010049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.166782 B = 2478.707641 C = 2785.812347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.015 3.985 3 C -0.266 4.266 4 C 0.020 3.980 5 C 0.124 3.876 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.539 4.539 9 H 0.046 0.954 10 C 0.034 3.966 11 N -0.898 5.898 12 Si 0.947 3.053 13 H -0.278 1.278 14 H -0.278 1.278 15 H -0.278 1.278 16 O 0.059 5.941 17 N -0.420 5.420 18 H 0.092 0.908 19 H 0.103 0.897 20 H 0.077 0.923 21 H 0.188 0.812 22 H 0.078 0.922 23 H 0.043 0.957 24 H 0.021 0.979 25 H 0.043 0.957 26 H 0.021 0.979 27 H 0.078 0.922 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 1.344 0.006 8.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 C -0.288 4.288 4 C -0.043 4.043 5 C 0.122 3.878 6 C -0.174 4.174 7 C -0.174 4.174 8 C -0.577 4.577 9 H 0.064 0.936 10 C -0.167 4.167 11 N -0.536 5.536 12 Si 0.774 3.226 13 H -0.203 1.203 14 H -0.203 1.203 15 H -0.203 1.203 16 O 0.003 5.997 17 N -0.134 5.134 18 H 0.111 0.889 19 H 0.122 0.878 20 H 0.096 0.904 21 H 0.205 0.795 22 H 0.096 0.904 23 H 0.062 0.938 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.877 0.156 0.013 8.878 hybrid contribution 0.991 0.049 0.005 0.993 sum -7.886 0.204 0.018 7.888 Atomic orbital electron populations 1.20293 0.83005 1.04730 1.04389 1.24300 1.00620 0.88558 1.00909 1.22615 0.90495 1.01779 1.13898 1.25626 0.99908 0.82487 0.96296 1.17065 0.84256 0.91477 0.94953 1.21689 1.02069 0.98147 0.95481 1.21687 1.02068 0.98110 0.95515 1.21221 0.91464 0.92665 1.52323 0.93561 1.25413 1.00384 0.96669 0.94194 1.69852 1.21040 1.12620 1.50081 0.85776 0.79021 0.79364 0.78461 1.20319 1.20265 1.20331 1.84772 1.21464 1.24785 1.68658 1.73773 0.89941 1.26093 1.23607 0.88901 0.87826 0.90446 0.79473 0.90355 0.93795 0.95986 0.93793 0.95986 0.90358 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 10.48 71.24 0.75 -0.78 15 2 C 0.02 0.55 7.33 43.58 0.32 0.87 15 3 C -0.27 -9.82 10.55 22.40 0.24 -9.58 15 4 C 0.02 0.91 5.76 25.04 0.14 1.05 15 5 C 0.12 5.95 0.67 -53.68 -0.04 5.91 15 6 C -0.12 -5.26 8.14 71.98 0.59 -4.67 15 7 C -0.12 -5.25 8.14 71.98 0.59 -4.67 15 8 C -0.54 -29.20 7.94 25.60 0.20 -29.00 15 9 H 0.05 2.62 7.03 -2.91 -0.02 2.60 15 10 C 0.03 1.78 5.15 84.65 0.44 2.22 15 11 N -0.90 -47.22 9.35 21.45 0.20 -47.02 15 12 Si 0.95 42.83 29.54 68.60 2.03 44.86 15 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 14 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 16 O 0.06 2.85 10.20 71.68 0.73 3.58 15 17 N -0.42 -18.07 12.07 -49.57 -0.60 -18.66 15 18 H 0.09 1.80 8.14 -2.38 -0.02 1.78 15 19 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15 21 H 0.19 5.63 8.06 -2.91 -0.02 5.61 15 22 H 0.08 3.84 6.07 -2.39 -0.01 3.82 15 23 H 0.04 1.69 8.04 -2.39 -0.02 1.67 15 24 H 0.02 0.98 8.14 -2.38 -0.02 0.96 15 25 H 0.04 1.69 8.03 -2.39 -0.02 1.67 15 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 15 27 H 0.08 3.84 6.07 -2.39 -0.01 3.82 15 28 H 0.26 13.34 8.31 -92.71 -0.77 12.57 15 Total: -1.00 -58.74 238.94 6.72 -52.02 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: 1.14 Total: 3.88 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 3.22 Total: -38.65 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -0.40 Total: -65.68 kcal Atomic # 8 Polarization: 2.85 SS G_CDS: 0.73 Total: 3.58 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -58.74 6.72 -52.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260789288.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.798 kcal (2) G-P(sol) polarization free energy of solvation -58.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds