Wall clock time and date at job start Mon Mar 30 2020 02:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 C 1.39665 * 125.68523 * 75.00168 * 5 2 1 7 7 C 1.39374 * 107.58053 * 179.97438 * 6 5 2 8 8 C 1.39935 * 126.44373 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99737 * 359.97438 * 8 7 6 10 10 C 1.40423 * 119.99966 * 179.97438 * 8 7 6 11 11 N 1.30574 * 120.00203 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99854 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46931 * 60.00385 * 12 10 8 14 14 H 1.48506 * 109.46903 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47536 * 300.00038 * 12 10 8 16 16 O 1.35133 * 107.11425 * 359.97438 * 7 6 5 17 17 N 1.30585 * 125.68772 * 254.69357 * 5 2 1 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 22 22 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 24 24 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 27 27 H 1.08006 * 126.20969 * 359.95643 * 6 5 2 28 28 H 0.97004 * 120.00228 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 2.0272 -0.1946 -2.5282 7 6 2.5751 -1.1625 -3.3682 8 6 2.7577 -1.0557 -4.7514 9 1 2.4609 -0.1545 -5.2673 10 6 3.3269 -2.1203 -5.4687 11 7 3.6853 -3.2101 -4.8451 12 14 3.5701 -1.9780 -7.3154 13 1 4.4633 -0.8289 -7.6099 14 1 4.1851 -3.2273 -7.8314 15 1 2.2558 -1.7646 -7.9728 16 8 2.8978 -2.2230 -2.5954 17 7 2.5503 -1.9088 -1.2599 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.6767 1.9563 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6767 -1.7488 1.2493 25 1 3.1300 -0.7207 1.2495 26 1 1.6766 -0.2073 2.1393 27 1 1.6642 0.7779 -2.8269 28 1 4.0788 -3.9454 -5.3405 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260844507.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:05 Heat of formation + Delta-G solvation = -13.617995 kcal Electronic energy + Delta-G solvation = -12216.244673 eV Core-core repulsion = 10039.783140 eV Total energy + Delta-G solvation = -2176.461532 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.52873 -37.92605 -35.77321 -32.49294 -31.56214 -28.51642 -28.10807 -27.10984 -23.46315 -22.05583 -20.18436 -18.47756 -17.25880 -16.34468 -15.92744 -15.33119 -14.99393 -14.86720 -14.64325 -13.99507 -13.31012 -13.17776 -13.00588 -12.98808 -12.61061 -12.51028 -12.11520 -12.00806 -11.91107 -11.78183 -11.42347 -11.14741 -10.75311 -9.63840 -8.93627 -6.92388 0.99466 1.35478 1.53978 1.57824 2.11021 2.11590 2.79024 3.06933 3.82294 3.93810 4.10611 4.39129 4.66115 4.78998 4.85089 4.88544 4.91370 4.96100 5.00007 5.12577 5.17149 5.30410 5.33502 5.45572 5.52226 5.83173 6.13244 6.39069 6.50552 7.34617 8.06837 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.073227 B = 0.009242 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.279790 B = 3029.026581 C = 3220.239624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.002 4.002 3 C -0.125 4.125 4 C -0.127 4.127 5 C 0.129 3.871 6 C -0.478 4.478 7 C 0.195 3.805 8 C -0.452 4.452 9 H 0.122 0.878 10 C 0.020 3.980 11 N -0.796 5.796 12 Si 1.017 2.983 13 H -0.248 1.248 14 H -0.263 1.263 15 H -0.248 1.248 16 O -0.129 6.129 17 N -0.471 5.471 18 H 0.038 0.962 19 H 0.054 0.946 20 H 0.097 0.903 21 H 0.094 0.906 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.093 0.907 27 H 0.128 0.872 28 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 6.539 2.072 7.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.003 4.003 3 C -0.183 4.183 4 C -0.185 4.185 5 C -0.033 4.033 6 C -0.506 4.506 7 C 0.135 3.865 8 C -0.482 4.482 9 H 0.140 0.860 10 C -0.201 4.201 11 N -0.420 5.420 12 Si 0.833 3.167 13 H -0.171 1.171 14 H -0.187 1.187 15 H -0.171 1.171 16 O -0.131 6.131 17 N -0.232 5.232 18 H 0.057 0.943 19 H 0.074 0.926 20 H 0.116 0.884 21 H 0.113 0.887 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.112 0.888 27 H 0.146 0.854 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.714 5.187 2.772 6.477 hybrid contribution 0.092 0.249 -1.164 1.194 sum -2.622 5.435 1.608 6.245 Atomic orbital electron populations 1.21764 0.91843 1.01511 1.03276 1.19318 0.96805 0.95313 0.88848 1.21766 1.00400 0.92940 1.03191 1.21728 1.00265 0.99833 0.96654 1.23069 0.91653 0.92041 0.96504 1.21881 1.32408 1.04860 0.91500 1.20903 0.87310 0.85172 0.93125 1.19597 1.35818 1.03762 0.89045 0.86002 1.27574 0.91248 0.92809 1.08478 1.69784 1.25361 1.04796 1.42074 0.84740 0.80507 0.79652 0.71758 1.17138 1.18731 1.17120 1.89275 1.71956 1.36246 1.15620 1.79840 1.31865 1.18519 0.93019 0.94294 0.92646 0.88431 0.88715 0.93988 0.92454 0.94100 0.94251 0.88847 0.85381 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.46 71.98 0.61 -3.29 15 2 C 0.00 -0.06 0.96 -52.93 -0.05 -0.11 15 3 C -0.13 -3.80 8.20 71.98 0.59 -3.21 15 4 C -0.13 -4.26 8.02 71.98 0.58 -3.69 15 5 C 0.13 6.52 5.64 43.09 0.24 6.76 15 6 C -0.48 -25.60 10.14 22.89 0.23 -25.37 15 7 C 0.19 11.62 6.88 22.95 0.16 11.78 15 8 C -0.45 -24.62 9.35 23.21 0.22 -24.40 15 9 H 0.12 5.94 7.85 -2.91 -0.02 5.92 15 10 C 0.02 1.00 5.50 85.41 0.47 1.47 15 11 N -0.80 -43.50 12.03 21.91 0.26 -43.23 15 12 Si 1.02 35.88 29.56 68.60 2.03 37.91 15 13 H -0.25 -8.24 7.11 99.48 0.71 -7.54 15 14 H -0.26 -8.76 7.11 99.48 0.71 -8.06 15 15 H -0.25 -8.24 7.11 99.48 0.71 -7.53 15 16 O -0.13 -8.29 10.49 26.27 0.28 -8.02 15 17 N -0.47 -27.55 12.20 -47.63 -0.58 -28.14 15 18 H 0.04 1.30 8.14 -2.39 -0.02 1.28 15 19 H 0.05 1.74 8.14 -2.39 -0.02 1.72 15 20 H 0.10 2.18 8.14 -2.38 -0.02 2.16 15 21 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 22 H 0.04 1.36 8.14 -2.39 -0.02 1.34 15 23 H 0.06 1.76 7.51 -2.39 -0.02 1.74 15 24 H 0.04 1.49 8.07 -2.39 -0.02 1.47 15 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 27 H 0.13 6.23 7.70 -2.91 -0.02 6.21 15 28 H 0.30 14.53 8.29 -92.71 -0.77 13.76 15 Total: -1.00 -69.52 245.18 6.16 -63.35 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.13 Total: 18.19 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 3.05 Total: -40.07 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -0.32 Total: -71.37 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.28 Total: -8.02 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal Total: -69.52 6.16 -63.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260844507.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.736 kcal (2) G-P(sol) polarization free energy of solvation -69.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds