Wall clock time and date at job start Mon Mar 30 2020 02:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47317 * 2 1 4 4 C 1.50702 * 109.46985 * 120.00181 * 2 1 3 5 5 C 1.34512 * 125.79146 * 239.99721 * 4 2 1 6 6 C 1.41376 * 106.84688 * 179.75198 * 5 4 2 7 7 C 1.34517 * 106.83881 * 0.37683 * 6 5 4 8 8 O 1.34305 * 125.78962 * 59.97943 * 4 2 1 9 9 C 1.53000 * 109.46988 * 239.99841 * 2 1 3 10 10 H 1.09000 * 109.47008 * 184.99779 * 9 2 1 11 11 N 1.46895 * 109.47491 * 305.00132 * 9 2 1 12 12 C 1.50700 * 109.46688 * 65.00228 * 9 2 1 13 13 H 1.07999 * 120.00457 * 0.02562 * 12 9 2 14 14 C 1.37881 * 119.99723 * 179.97438 * 12 9 2 15 15 N 1.31511 * 120.00097 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99854 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47202 * 90.00140 * 16 14 12 18 18 H 1.48503 * 109.46888 * 210.00273 * 16 14 12 19 19 H 1.48499 * 109.47222 * 330.00128 * 16 14 12 20 20 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46916 * 299.99713 * 1 2 3 22 22 H 1.08997 * 109.47531 * 59.99996 * 1 2 3 23 23 H 1.08006 * 126.57585 * 359.97438 * 5 4 2 24 24 H 1.07998 * 126.58562 * 180.23597 * 6 5 4 25 25 H 1.08002 * 125.79423 * 179.89440 * 7 6 5 26 26 H 1.00901 * 111.00080 * 296.04938 * 11 9 2 27 27 H 1.00902 * 110.99782 * 59.99570 * 11 9 2 28 28 H 0.97002 * 120.00122 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8089 -0.1721 2.1878 6 6 3.0334 -1.1833 3.1500 7 6 2.3875 -2.2817 2.7190 8 8 1.7802 -1.9885 1.5574 9 6 2.0399 -0.7213 -1.2492 10 1 3.1262 -0.7995 -1.2056 11 7 1.4542 -2.0670 -1.3112 12 6 1.6412 0.0571 -2.4765 13 1 1.0806 0.9746 -2.3756 14 6 1.9931 -0.4017 -3.7282 15 7 2.6762 -1.5187 -3.8511 16 14 1.4983 0.5628 -5.2496 17 1 2.5630 1.5431 -5.5822 18 1 1.3120 -0.3713 -6.3889 19 1 0.2266 1.2832 -4.9871 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 3.1854 0.8397 2.2176 24 1 3.6141 -1.0922 4.0560 25 1 2.3581 -3.2361 3.2236 26 1 1.7591 -2.6303 -0.5315 27 1 0.4471 -2.0214 -1.3523 28 1 2.9235 -1.8417 -4.7318 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260909134.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:44 Heat of formation + Delta-G solvation = 8.180516 kcal Electronic energy + Delta-G solvation = -12393.192251 eV Core-core repulsion = 10217.675974 eV Total energy + Delta-G solvation = -2175.516278 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.11098 -36.16219 -32.61132 -32.09807 -29.93126 -27.97098 -25.97641 -23.67965 -21.27196 -20.81121 -19.04770 -16.65666 -16.23249 -15.56197 -14.54552 -14.32626 -13.86815 -13.39619 -12.85500 -12.45552 -12.35919 -12.16833 -11.82854 -11.05849 -10.88501 -10.75252 -10.48182 -10.21481 -9.70487 -9.49578 -8.93372 -8.36036 -7.98477 -6.85316 -5.81823 -3.97010 2.24168 3.06366 3.36104 3.43305 3.44869 3.51330 4.51061 5.19014 5.40894 5.43334 5.47889 5.83985 6.00229 6.10152 6.24393 6.27824 6.38210 6.59708 6.73231 6.81623 6.90993 6.98416 7.51081 7.69751 7.94165 8.26346 8.74214 9.13900 9.26560 9.71587 11.22950 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.066109 B = 0.009818 C = 0.009451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.441467 B = 2851.179460 C = 2962.011603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.054 4.054 3 H 0.090 0.910 4 C 0.031 3.969 5 C -0.241 4.241 6 C -0.213 4.213 7 C -0.065 4.065 8 O -0.171 6.171 9 C 0.233 3.767 10 H 0.037 0.963 11 N -0.811 5.811 12 C -0.537 4.537 13 H 0.055 0.945 14 C 0.083 3.917 15 N -0.846 5.846 16 Si 0.882 3.118 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.275 1.275 20 H 0.051 0.949 21 H 0.036 0.964 22 H 0.074 0.926 23 H 0.141 0.859 24 H 0.140 0.860 25 H 0.194 0.806 26 H 0.300 0.700 27 H 0.316 0.684 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 0.766 10.262 10.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 H 0.108 0.892 4 C -0.020 4.020 5 C -0.260 4.260 6 C -0.232 4.232 7 C -0.132 4.132 8 O -0.067 6.067 9 C 0.122 3.878 10 H 0.055 0.945 11 N -0.339 5.339 12 C -0.575 4.575 13 H 0.073 0.927 14 C -0.124 4.124 15 N -0.481 5.481 16 Si 0.710 3.290 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.200 1.200 20 H 0.070 0.930 21 H 0.055 0.945 22 H 0.093 0.907 23 H 0.159 0.841 24 H 0.158 0.842 25 H 0.211 0.789 26 H 0.112 0.888 27 H 0.129 0.871 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.423 0.337 9.260 9.375 hybrid contribution -0.420 0.828 0.359 0.995 sum -1.843 1.164 9.618 9.862 Atomic orbital electron populations 1.21731 0.94710 1.01627 1.01164 1.21124 0.96239 0.98991 0.91092 0.89185 1.23181 0.99008 0.81724 0.98080 1.21514 1.06501 1.01248 0.96707 1.21708 1.05562 0.93953 1.01979 1.23865 1.01014 1.00584 0.87755 1.84029 1.59289 1.28559 1.34836 1.19054 0.95125 0.85227 0.88356 0.94513 1.59159 1.11678 1.15402 1.47692 1.20880 1.38246 1.07990 0.90415 0.92671 1.24952 0.94492 0.94380 0.98532 1.70118 1.35990 1.19530 1.22477 0.86791 0.78868 0.79879 0.83435 1.20861 1.21365 1.20042 0.93021 0.94476 0.90713 0.84144 0.84244 0.78878 0.88804 0.87089 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.52 37.16 0.32 -2.19 15 2 C -0.05 -1.09 2.57 -91.77 -0.24 -1.33 15 3 H 0.09 1.80 8.10 -51.93 -0.42 1.38 15 4 C 0.03 0.59 5.66 -35.62 -0.20 0.39 15 5 C -0.24 -4.18 10.78 -39.71 -0.43 -4.61 15 6 C -0.21 -3.24 10.91 -39.70 -0.43 -3.68 15 7 C -0.06 -0.98 12.09 29.42 0.36 -0.62 15 8 O -0.17 -3.16 8.73 5.68 0.05 -3.11 15 9 C 0.23 5.79 2.43 -68.87 -0.17 5.62 15 10 H 0.04 1.04 8.14 -51.93 -0.42 0.62 15 11 N -0.81 -19.76 8.36 -5.66 -0.05 -19.81 15 12 C -0.54 -14.49 8.02 -34.44 -0.28 -14.77 15 13 H 0.06 1.44 7.06 -52.49 -0.37 1.07 15 14 C 0.08 2.32 5.39 -17.82 -0.10 2.23 15 15 N -0.85 -25.04 12.77 55.43 0.71 -24.33 15 16 Si 0.88 21.23 29.54 -169.99 -5.02 16.21 15 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 20 H 0.05 0.95 6.61 -51.93 -0.34 0.61 15 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 22 H 0.07 1.44 6.95 -51.93 -0.36 1.08 15 23 H 0.14 2.20 8.06 -52.48 -0.42 1.78 15 24 H 0.14 1.71 8.06 -52.49 -0.42 1.29 15 25 H 0.19 2.09 8.06 -52.49 -0.42 1.67 15 26 H 0.30 6.87 6.82 -39.29 -0.27 6.60 15 27 H 0.32 7.36 7.03 -39.29 -0.28 7.09 15 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 238.41 15.07 3.59 3.59 Total: -1.00 -30.00 238.41 -5.17 -35.17 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -3.29 Total: 11.22 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -1.17 Total: -18.95 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.66 Total: -44.14 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.05 Total: -3.11 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.00 -5.17 -35.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260909134.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.355 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds