Wall clock time and date at job start Mon Mar 30 2020 02:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 C 1.34522 * 125.78697 * 120.00016 * 4 2 1 6 6 C 1.41377 * 106.83876 * 180.02562 * 5 4 2 7 7 C 1.34515 * 106.84423 * 359.97438 * 6 5 4 8 8 O 1.34301 * 125.79198 * 299.69849 * 4 2 1 9 9 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 10 10 H 1.09001 * 109.47362 * 60.00551 * 9 2 1 11 11 N 1.46906 * 109.46897 * 179.97438 * 9 2 1 12 12 C 1.50703 * 109.47466 * 299.99910 * 9 2 1 13 13 H 1.07997 * 119.99722 * 359.97438 * 12 9 2 14 14 C 1.37873 * 119.99873 * 180.02562 * 12 9 2 15 15 N 1.31512 * 120.00006 * 180.02562 * 14 12 9 16 16 Si 1.86800 * 120.00328 * 0.02562 * 14 12 9 17 17 H 1.48501 * 109.47509 * 89.99743 * 16 14 12 18 18 H 1.48494 * 109.47205 * 210.00004 * 16 14 12 19 19 H 1.48501 * 109.47041 * 330.00003 * 16 14 12 20 20 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 23 23 H 1.07998 * 126.57634 * 359.96616 * 5 4 2 24 24 H 1.08001 * 126.57837 * 180.02562 * 6 5 4 25 25 H 1.07995 * 125.79313 * 180.02562 * 7 6 5 26 26 H 1.00900 * 110.99744 * 60.00323 * 11 9 2 27 27 H 1.00897 * 111.00162 * 183.95339 * 11 9 2 28 28 H 0.97001 * 120.00117 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.8090 -0.1720 -2.1877 6 6 3.0379 -1.1848 -3.1472 7 6 2.3879 -2.2818 -2.7186 8 8 1.7854 -1.9902 -1.5543 9 6 2.0399 -0.7212 1.2493 10 1 1.6767 -1.7489 1.2493 11 7 3.5090 -0.7218 1.2490 12 6 1.5376 -0.0108 2.4798 13 1 0.9171 0.8676 2.3806 14 6 1.8710 -0.4816 3.7320 15 7 1.4323 0.1381 4.8058 16 14 2.9461 -1.9996 3.9035 17 1 4.3736 -1.5928 3.9488 18 1 2.5954 -2.7155 5.1563 19 1 2.7239 -2.8973 2.7415 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 3.1847 0.8401 -2.2180 24 1 3.6230 -1.0952 -4.0505 25 1 2.3594 -3.2364 -3.2229 26 1 3.8709 0.2201 1.2489 27 1 3.8705 -1.2479 2.0304 28 1 1.6672 -0.1929 5.6868 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260909137.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:46 Heat of formation + Delta-G solvation = 9.060711 kcal Electronic energy + Delta-G solvation = -12399.510103 eV Core-core repulsion = 10224.031993 eV Total energy + Delta-G solvation = -2175.478110 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.98310 -36.25530 -32.60399 -32.22314 -31.03204 -28.14918 -25.71046 -23.51379 -21.31730 -20.73548 -19.09033 -17.35168 -16.40371 -15.52332 -15.00964 -14.32210 -14.01905 -13.52545 -12.94673 -12.47631 -12.27463 -12.14808 -11.76287 -11.42595 -10.99563 -10.81960 -10.67819 -10.19062 -9.86597 -9.47065 -9.36149 -8.75389 -7.80697 -7.47925 -6.21765 -4.24351 2.35777 3.15869 3.18322 3.30099 3.33295 3.61539 4.26507 5.08824 5.23383 5.48519 5.52241 5.65584 5.92475 6.05880 6.28812 6.35184 6.38243 6.55922 6.64531 6.72009 6.95617 7.03885 7.21527 7.53217 7.76648 8.10859 8.33690 8.54482 8.83352 9.39262 10.90740 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.051456 B = 0.011715 C = 0.010611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.021035 B = 2389.557858 C = 2638.142449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 H 0.090 0.910 4 C 0.051 3.949 5 C -0.237 4.237 6 C -0.211 4.211 7 C -0.069 4.069 8 O -0.172 6.172 9 C 0.182 3.818 10 H 0.043 0.957 11 N -0.849 5.849 12 C -0.549 4.549 13 H 0.080 0.920 14 C 0.073 3.927 15 N -0.892 5.892 16 Si 0.872 3.128 17 H -0.276 1.276 18 H -0.292 1.292 19 H -0.259 1.259 20 H 0.041 0.959 21 H 0.052 0.948 22 H 0.078 0.922 23 H 0.139 0.861 24 H 0.138 0.862 25 H 0.192 0.808 26 H 0.330 0.670 27 H 0.315 0.685 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -2.416 -11.318 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.015 4.015 3 H 0.108 0.892 4 C 0.000 4.000 5 C -0.256 4.256 6 C -0.230 4.230 7 C -0.136 4.136 8 O -0.068 6.068 9 C 0.072 3.928 10 H 0.061 0.939 11 N -0.382 5.382 12 C -0.589 4.589 13 H 0.098 0.902 14 C -0.131 4.131 15 N -0.530 5.530 16 Si 0.701 3.299 17 H -0.203 1.203 18 H -0.219 1.219 19 H -0.184 1.184 20 H 0.060 0.940 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.157 0.843 24 H 0.155 0.845 25 H 0.208 0.792 26 H 0.141 0.859 27 H 0.131 0.869 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.504 -3.011 -11.647 12.124 hybrid contribution 0.787 -0.250 1.007 1.302 sum 2.290 -3.261 -10.640 11.362 Atomic orbital electron populations 1.21742 0.94010 1.02044 1.01588 1.19827 0.95793 0.97536 0.88349 0.89170 1.22773 0.98476 0.81385 0.97321 1.21389 1.06177 1.01097 0.96929 1.21661 1.05315 0.94065 1.01980 1.23767 1.01450 1.00542 0.87851 1.84009 1.59634 1.28561 1.34588 1.19476 0.85155 0.96434 0.91720 0.93877 1.59650 1.10371 1.19121 1.49009 1.21755 1.33454 1.14147 0.89546 0.90246 1.25012 0.95724 0.96367 0.95954 1.69898 1.44973 1.40093 0.98002 0.87016 0.80733 0.84288 0.77830 1.20296 1.21903 1.18422 0.93975 0.92893 0.90329 0.84349 0.84461 0.79161 0.85908 0.86941 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.92 37.16 0.33 -2.22 15 2 C 0.00 0.08 2.50 -91.77 -0.23 -0.15 15 3 H 0.09 1.75 8.10 -51.93 -0.42 1.33 15 4 C 0.05 0.99 5.43 -35.62 -0.19 0.80 15 5 C -0.24 -4.11 10.78 -39.70 -0.43 -4.54 15 6 C -0.21 -3.26 10.91 -39.70 -0.43 -3.69 15 7 C -0.07 -1.07 12.09 29.42 0.36 -0.71 15 8 O -0.17 -3.32 10.65 5.71 0.06 -3.25 15 9 C 0.18 4.26 1.82 -68.86 -0.13 4.14 15 10 H 0.04 1.10 7.20 -51.93 -0.37 0.72 15 11 N -0.85 -19.06 8.73 -5.65 -0.05 -19.11 15 12 C -0.55 -14.73 8.58 -34.44 -0.30 -15.03 15 13 H 0.08 2.26 6.96 -52.49 -0.37 1.90 15 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 15 N -0.89 -26.52 13.96 55.43 0.77 -25.74 15 16 Si 0.87 21.30 24.61 -169.99 -4.18 17.12 15 17 H -0.28 -6.51 7.01 56.52 0.40 -6.11 15 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 19 H -0.26 -6.31 6.54 56.52 0.37 -5.94 15 20 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.08 1.56 6.62 -51.93 -0.34 1.21 15 23 H 0.14 2.16 8.06 -52.49 -0.42 1.74 15 24 H 0.14 1.71 8.06 -52.49 -0.42 1.29 15 25 H 0.19 2.14 8.06 -52.49 -0.42 1.72 15 26 H 0.33 6.97 8.99 -39.29 -0.35 6.62 15 27 H 0.31 7.28 4.29 -39.29 -0.17 7.11 15 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 236.02 15.07 3.56 3.56 Total: -1.00 -29.90 236.02 -4.27 -34.16 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -3.31 Total: 12.74 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -1.11 Total: -19.47 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.72 Total: -44.85 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: 0.06 Total: -3.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.18 Total: 17.12 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.90 -4.27 -34.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260909137.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.224 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds