Wall clock time and date at job start Mon Mar 30 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00510 * 2 1 4 4 C 1.46900 * 110.99774 * 123.95177 * 2 1 3 5 5 C 1.50707 * 109.47439 * 66.04769 * 4 2 1 6 6 C 1.35666 * 126.32385 * 270.00113 * 5 4 2 7 7 O 1.34235 * 109.21317 * 179.72604 * 6 5 4 8 8 C 1.35085 * 109.39079 * 0.44501 * 7 6 5 9 9 C 1.39748 * 126.20667 * 179.81990 * 8 7 6 10 10 H 1.07998 * 120.00183 * 187.95612 * 9 8 7 11 11 C 1.40159 * 120.00020 * 7.96546 * 9 8 7 12 12 N 1.30809 * 120.00183 * 191.86523 * 11 9 8 13 13 Si 1.86800 * 119.99923 * 11.86152 * 11 9 8 14 14 H 1.48500 * 109.47286 * 270.00379 * 13 11 9 15 15 H 1.48497 * 109.47302 * 30.00404 * 13 11 9 16 16 H 1.48505 * 109.47180 * 150.00124 * 13 11 9 17 17 C 1.39549 * 107.58998 * 359.56551 * 8 7 6 18 18 H 1.08998 * 109.47316 * 296.05118 * 1 2 3 19 19 H 1.09005 * 109.46536 * 56.05076 * 1 2 3 20 20 H 1.09004 * 109.46795 * 176.04564 * 1 2 3 21 21 H 1.08994 * 109.47742 * 183.95068 * 3 2 1 22 22 H 1.09009 * 109.46687 * 303.95552 * 3 2 1 23 23 H 1.08999 * 109.47301 * 63.94580 * 3 2 1 24 24 H 1.08998 * 109.47511 * 306.04348 * 4 2 1 25 25 H 1.09004 * 109.47214 * 186.04198 * 4 2 1 26 26 H 1.08005 * 125.38863 * 0.02562 * 6 5 4 27 27 H 0.96996 * 119.99850 * 354.72946 * 12 11 9 28 28 H 1.08001 * 126.77646 * 180.26547 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6369 -2.2205 0.9730 6 6 0.5132 -2.8279 1.4299 7 8 0.5421 -4.1256 1.0877 8 6 1.6837 -4.3864 0.4142 9 6 2.0733 -5.6256 -0.1012 10 1 3.0644 -5.7525 -0.5110 11 6 1.1778 -6.7036 -0.0863 12 7 1.6045 -7.9121 -0.3482 13 14 -0.6252 -6.4147 0.3075 14 1 -0.8382 -6.5394 1.7718 15 1 -1.0166 -5.0525 -0.1354 16 1 -1.4543 -7.4227 -0.4009 17 6 2.4007 -3.1928 0.3213 18 1 -0.3634 0.4513 0.9232 19 1 -0.3632 0.5740 -0.8526 20 1 -0.3633 -1.0253 -0.0709 21 1 3.0828 1.3431 -0.0708 22 1 1.5898 1.9162 -0.8525 23 1 1.7044 1.8723 0.9232 24 1 1.5611 -0.3872 2.0628 25 1 3.0797 -0.6612 1.1757 26 1 -0.2814 -2.3429 1.9777 27 1 2.5229 -8.0523 -0.6272 28 1 3.3570 -3.0487 -0.1594 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055552.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:24 Heat of formation + Delta-G solvation = -3.151730 kcal Electronic energy + Delta-G solvation = -12152.465079 eV Core-core repulsion = 9976.457398 eV Total energy + Delta-G solvation = -2176.007681 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.68048 -37.01371 -33.70487 -31.86966 -29.47968 -27.30613 -26.53033 -24.29838 -21.77529 -19.66695 -19.50625 -17.58251 -15.85723 -15.17736 -14.84476 -14.44190 -14.26702 -13.67236 -13.34025 -12.61860 -12.24567 -12.03477 -11.53551 -11.42555 -11.30564 -11.01185 -10.87390 -10.47468 -9.95510 -9.56137 -9.30596 -8.30066 -7.95917 -7.45630 -7.24672 -4.48456 3.02158 3.26180 3.39968 3.61606 3.88369 4.09519 4.59593 4.85703 5.18666 5.37646 5.45802 5.58656 5.66435 5.85794 5.94693 6.00689 6.13368 6.31770 6.42071 7.05226 7.23427 7.36516 7.44192 7.46144 7.55827 7.92368 8.10281 8.42395 8.54832 8.98506 10.00346 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.064894 B = 0.009938 C = 0.009182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.371795 B = 2816.689087 C = 3048.704859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.026 3.974 4 C 0.130 3.870 5 C -0.117 4.117 6 C -0.180 4.180 7 O -0.208 6.208 8 C 0.182 3.818 9 C -0.498 4.498 10 H 0.096 0.904 11 C 0.043 3.957 12 N -0.814 5.814 13 Si 1.075 2.925 14 H -0.274 1.274 15 H -0.258 1.258 16 H -0.286 1.286 17 C -0.368 4.368 18 H 0.017 0.983 19 H 0.059 0.941 20 H 0.080 0.920 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.018 0.982 24 H 0.028 0.972 25 H 0.072 0.928 26 H 0.163 0.837 27 H 0.286 0.714 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.562 10.921 1.723 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.122 4.122 4 C 0.004 3.996 5 C -0.119 4.119 6 C -0.244 4.244 7 O -0.109 6.109 8 C 0.131 3.869 9 C -0.527 4.527 10 H 0.114 0.886 11 C -0.177 4.177 12 N -0.439 5.439 13 Si 0.901 3.099 14 H -0.200 1.200 15 H -0.183 1.183 16 H -0.214 1.214 17 C -0.389 4.389 18 H 0.036 0.964 19 H 0.078 0.922 20 H 0.098 0.902 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.037 0.963 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.180 0.820 27 H 0.097 0.903 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.981 9.683 1.576 10.587 hybrid contribution 1.567 1.323 0.442 2.097 sum -2.414 11.005 2.018 11.446 Atomic orbital electron populations 1.22410 0.87572 1.03248 0.99156 1.61924 1.08057 1.12346 1.44100 1.22361 1.00636 0.89464 0.99782 1.20357 0.99147 0.90261 0.89876 1.19495 0.96267 0.93732 1.02388 1.22773 1.02559 0.83124 1.15988 1.83943 1.39226 1.26882 1.60821 1.19799 0.82135 0.94764 0.90196 1.19727 1.02477 0.92886 1.37639 0.88580 1.27328 1.07650 0.91363 0.91326 1.70552 1.20909 1.21967 1.30435 0.83421 0.71849 0.76568 0.78081 1.19970 1.18294 1.21364 1.20983 1.05098 0.92035 1.20756 0.96407 0.92186 0.90159 0.91659 0.91801 0.96303 0.95350 0.90939 0.81969 0.90261 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.28 60.06 0.56 0.94 15 2 N -0.54 -9.24 5.01 -252.72 -1.27 -10.50 15 3 C 0.03 0.34 9.57 60.06 0.57 0.92 15 4 C 0.13 2.39 5.46 -4.97 -0.03 2.37 15 5 C -0.12 -2.66 5.01 -104.97 -0.53 -3.18 15 6 C -0.18 -4.11 10.63 29.81 0.32 -3.80 15 7 O -0.21 -5.42 6.10 3.69 0.02 -5.40 15 8 C 0.18 5.00 6.45 -38.53 -0.25 4.75 15 9 C -0.50 -14.03 9.73 -38.30 -0.37 -14.40 15 10 H 0.10 2.74 8.06 -52.49 -0.42 2.32 15 11 C 0.04 1.18 5.52 -17.27 -0.10 1.08 15 12 N -0.81 -22.31 13.65 55.56 0.76 -21.55 15 13 Si 1.08 25.40 26.43 -169.99 -4.49 20.90 15 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 15 H -0.26 -6.11 6.34 56.52 0.36 -5.75 15 16 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 17 C -0.37 -9.50 10.89 -38.52 -0.42 -9.92 15 18 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 15 19 H 0.06 0.82 8.12 -51.93 -0.42 0.40 15 20 H 0.08 1.43 6.33 -51.93 -0.33 1.10 15 21 H 0.06 0.81 8.12 -51.93 -0.42 0.39 15 22 H 0.06 0.74 8.12 -51.92 -0.42 0.32 15 23 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 15 24 H 0.03 0.48 8.12 -51.93 -0.42 0.05 15 25 H 0.07 1.28 8.06 -51.93 -0.42 0.86 15 26 H 0.16 3.11 8.06 -52.48 -0.42 2.69 15 27 H 0.29 7.55 8.73 -40.82 -0.36 7.20 15 28 H 0.11 2.84 8.06 -52.49 -0.42 2.42 15 LS Contribution 240.35 15.07 3.62 3.62 Total: -1.00 -29.16 240.35 -5.34 -34.50 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.74 Total: -0.33 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -0.24 Total: -21.24 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: -0.51 Total: -32.06 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: 0.02 Total: -5.40 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -4.49 Total: 20.90 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.16 -5.34 -34.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055552.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.349 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds