Wall clock time and date at job start Mon Mar 30 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00510 * 2 1 4 4 C 1.46900 * 110.99774 * 123.95177 * 2 1 3 5 5 C 1.50707 * 109.47439 * 66.04769 * 4 2 1 6 6 C 1.35666 * 126.32385 * 270.00113 * 5 4 2 7 7 O 1.34235 * 109.21317 * 179.72604 * 6 5 4 8 8 C 1.35085 * 109.39079 * 0.44501 * 7 6 5 9 9 C 1.39748 * 126.20667 * 179.81990 * 8 7 6 10 10 H 1.07998 * 120.00183 * 187.95612 * 9 8 7 11 11 C 1.40159 * 120.00020 * 7.96546 * 9 8 7 12 12 N 1.30809 * 120.00183 * 191.86523 * 11 9 8 13 13 Si 1.86800 * 119.99923 * 11.86152 * 11 9 8 14 14 H 1.48500 * 109.47286 * 270.00379 * 13 11 9 15 15 H 1.48497 * 109.47302 * 30.00404 * 13 11 9 16 16 H 1.48505 * 109.47180 * 150.00124 * 13 11 9 17 17 C 1.39549 * 107.58998 * 359.56551 * 8 7 6 18 18 H 1.08998 * 109.47316 * 296.05118 * 1 2 3 19 19 H 1.09005 * 109.46536 * 56.05076 * 1 2 3 20 20 H 1.09004 * 109.46795 * 176.04564 * 1 2 3 21 21 H 1.08994 * 109.47742 * 183.95068 * 3 2 1 22 22 H 1.09009 * 109.46687 * 303.95552 * 3 2 1 23 23 H 1.08999 * 109.47301 * 63.94580 * 3 2 1 24 24 H 1.08998 * 109.47511 * 306.04348 * 4 2 1 25 25 H 1.09004 * 109.47214 * 186.04198 * 4 2 1 26 26 H 1.08005 * 125.38863 * 0.02562 * 6 5 4 27 27 H 0.96996 * 119.99850 * 354.72946 * 12 11 9 28 28 H 1.08001 * 126.77646 * 180.26547 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6369 -2.2205 0.9730 6 6 0.5132 -2.8279 1.4299 7 8 0.5421 -4.1256 1.0877 8 6 1.6837 -4.3864 0.4142 9 6 2.0733 -5.6256 -0.1012 10 1 3.0644 -5.7525 -0.5110 11 6 1.1778 -6.7036 -0.0863 12 7 1.6045 -7.9121 -0.3482 13 14 -0.6252 -6.4147 0.3075 14 1 -0.8382 -6.5394 1.7718 15 1 -1.0166 -5.0525 -0.1354 16 1 -1.4543 -7.4227 -0.4009 17 6 2.4007 -3.1928 0.3213 18 1 -0.3634 0.4513 0.9232 19 1 -0.3632 0.5740 -0.8526 20 1 -0.3633 -1.0253 -0.0709 21 1 3.0828 1.3431 -0.0708 22 1 1.5898 1.9162 -0.8525 23 1 1.7044 1.8723 0.9232 24 1 1.5611 -0.3872 2.0628 25 1 3.0797 -0.6612 1.1757 26 1 -0.2814 -2.3429 1.9777 27 1 2.5229 -8.0523 -0.6272 28 1 3.3570 -3.0487 -0.1594 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055552.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:24 Heat of formation + Delta-G solvation = -23.101193 kcal Electronic energy + Delta-G solvation = -12153.330153 eV Core-core repulsion = 9976.457398 eV Total energy + Delta-G solvation = -2176.872755 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.64895 -38.31684 -35.76663 -33.65325 -31.47071 -28.44834 -28.03998 -26.22622 -23.11412 -21.67178 -21.43549 -19.46385 -17.75823 -16.76786 -16.11187 -15.99564 -15.91778 -15.53515 -15.09088 -14.51828 -13.60769 -13.36349 -13.19779 -12.93957 -12.83665 -12.55076 -12.40618 -12.13614 -11.95240 -11.44015 -11.30836 -10.16564 -9.55816 -9.33113 -9.14770 -6.58769 1.07444 1.37277 1.57523 1.76175 2.00245 2.19326 2.87373 3.09172 3.33306 4.13523 4.21050 4.38050 4.50578 4.55774 4.68164 4.73782 4.79325 5.01321 5.08875 5.16729 5.29846 5.33488 5.56191 5.86135 6.07143 6.16850 6.23035 6.42511 6.49175 6.95306 7.89957 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.064894 B = 0.009938 C = 0.009182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.371795 B = 2816.689087 C = 3048.704859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.567 5.567 3 C 0.027 3.973 4 C 0.136 3.864 5 C -0.121 4.121 6 C -0.169 4.169 7 O -0.217 6.217 8 C 0.154 3.846 9 C -0.528 4.528 10 H 0.073 0.927 11 C 0.013 3.987 12 N -0.832 5.832 13 Si 1.109 2.891 14 H -0.263 1.263 15 H -0.261 1.261 16 H -0.268 1.268 17 C -0.381 4.381 18 H 0.037 0.963 19 H 0.077 0.923 20 H 0.053 0.947 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.035 0.965 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.206 0.794 27 H 0.282 0.718 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 13.147 2.601 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.291 5.291 3 C -0.120 4.120 4 C 0.009 3.991 5 C -0.122 4.122 6 C -0.233 4.233 7 O -0.118 6.118 8 C 0.103 3.897 9 C -0.558 4.558 10 H 0.092 0.908 11 C -0.202 4.202 12 N -0.456 5.456 13 Si 0.930 3.070 14 H -0.189 1.189 15 H -0.186 1.186 16 H -0.194 1.194 17 C -0.402 4.402 18 H 0.055 0.945 19 H 0.096 0.904 20 H 0.072 0.928 21 H 0.087 0.913 22 H 0.097 0.903 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.222 0.778 27 H 0.092 0.908 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.402 11.908 2.448 13.303 hybrid contribution 2.062 0.813 0.185 2.224 sum -3.340 12.720 2.633 13.412 Atomic orbital electron populations 1.22394 0.86821 1.02041 1.01013 1.61843 1.09023 1.14583 1.43685 1.22412 1.00847 0.87462 1.01286 1.20317 0.99661 0.87681 0.91482 1.19914 0.95405 0.95787 1.01129 1.23712 1.03358 0.81924 1.14290 1.83941 1.38572 1.28618 1.60636 1.19836 0.83317 0.95005 0.91493 1.19698 1.02150 0.94375 1.39614 0.90850 1.28367 1.10320 0.90803 0.90731 1.70596 1.20814 1.22263 1.31961 0.83020 0.68617 0.76670 0.78695 1.18856 1.18648 1.19393 1.21246 1.05199 0.92812 1.20987 0.94452 0.90443 0.92835 0.91347 0.90314 0.94653 0.93090 0.90663 0.77790 0.90763 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.28 127.69 1.19 1.89 15 2 N -0.57 -17.57 5.01 -953.46 -4.78 -22.34 15 3 C 0.03 0.62 9.57 127.69 1.22 1.84 15 4 C 0.14 4.56 5.46 85.56 0.47 5.03 15 5 C -0.12 -5.24 5.01 -20.09 -0.10 -5.34 15 6 C -0.17 -7.26 10.63 67.22 0.71 -6.55 15 7 O -0.22 -11.04 6.10 -9.70 -0.06 -11.09 15 8 C 0.15 8.56 6.45 22.95 0.15 8.71 15 9 C -0.53 -30.81 9.73 23.10 0.22 -30.58 15 10 H 0.07 4.44 8.06 -2.91 -0.02 4.42 15 11 C 0.01 0.72 5.52 85.31 0.47 1.19 15 12 N -0.83 -46.50 13.65 21.87 0.30 -46.21 15 13 Si 1.11 50.81 26.43 68.60 1.81 52.62 15 14 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 15 H -0.26 -11.96 6.34 99.48 0.63 -11.33 15 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 17 C -0.38 -19.73 10.89 22.96 0.25 -19.48 15 18 H 0.04 0.88 8.14 -2.39 -0.02 0.86 15 19 H 0.08 1.84 8.12 -2.38 -0.02 1.82 15 20 H 0.05 1.76 6.33 -2.39 -0.02 1.74 15 21 H 0.07 1.48 8.12 -2.39 -0.02 1.47 15 22 H 0.08 1.54 8.12 -2.38 -0.02 1.52 15 23 H 0.03 0.69 8.14 -2.39 -0.02 0.67 15 24 H 0.05 1.49 8.12 -2.39 -0.02 1.47 15 25 H 0.07 2.46 8.06 -2.38 -0.02 2.44 15 26 H 0.21 6.89 8.06 -2.91 -0.02 6.87 15 27 H 0.28 15.44 8.73 -92.71 -0.81 14.63 15 28 H 0.11 5.52 8.06 -2.91 -0.02 5.50 15 Total: -1.00 -62.59 240.35 2.87 -59.72 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.01 Total: 10.61 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 4.58 Total: -43.30 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -4.48 Total: -68.55 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.06 Total: -11.09 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.81 Total: 52.62 kcal Total: -62.59 2.87 -59.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055552.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.616 kcal (2) G-P(sol) polarization free energy of solvation -62.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds