Wall clock time and date at job start Mon Mar 30 2020 02:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08989 * 108.86460 * 61.41381 * 9 7 2 11 11 C 1.51453 * 108.88724 * 302.91931 * 9 7 2 12 12 C 1.51068 * 111.92454 * 294.75981 * 11 9 7 13 13 C 1.48741 * 115.68136 * 314.60621 * 12 11 9 14 14 H 1.09002 * 104.98000 * 147.97035 * 13 12 11 15 15 N 1.46060 * 114.97014 * 262.83700 * 13 12 11 16 16 N 1.23232 * 110.08951 * 140.66345 * 15 13 12 17 17 N 1.39692 * 114.83284 * 358.93504 * 16 15 13 18 18 C 1.48748 * 106.97981 * 354.91316 * 17 16 15 19 19 H 1.09001 * 110.83903 * 125.44273 * 18 17 16 20 20 C 1.50727 * 108.88357 * 180.02562 * 9 7 2 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09005 * 108.98723 * 55.38751 * 11 9 7 23 23 H 1.08999 * 108.98775 * 174.12255 * 11 9 7 24 24 H 1.09006 * 108.23707 * 193.00192 * 12 11 9 25 25 H 1.09001 * 108.09297 * 76.10481 * 12 11 9 26 26 H 0.96998 * 126.50882 * 174.95398 * 17 16 15 27 27 H 1.09007 * 108.34314 * 191.97697 * 20 9 7 28 28 H 1.09002 * 108.34781 * 309.03161 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8636 -0.7003 0.9068 11 6 4.0023 -0.4155 -1.2018 12 6 3.6301 -1.0907 -2.5009 13 6 3.8692 -2.5578 -2.5564 14 1 3.0862 -2.9464 -3.2075 15 7 5.1224 -2.9546 -3.1929 16 7 5.6263 -3.8995 -2.5830 17 7 4.9094 -4.3229 -1.4614 18 6 3.7763 -3.3753 -1.2868 19 1 2.8265 -3.9089 -1.2506 20 6 3.9995 -2.6201 0.0010 21 1 -0.4850 0.8400 -0.0004 22 1 3.5631 0.5820 -1.1819 23 1 5.0872 -0.3248 -1.1471 24 1 4.1985 -0.6219 -3.3041 25 1 2.5710 -0.9105 -2.6847 26 1 5.1124 -5.0891 -0.9022 27 1 5.0681 -2.6171 0.2161 28 1 3.4938 -3.1558 0.8044 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261067064.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:40 Heat of formation + Delta-G solvation = 49.284991 kcal Electronic energy + Delta-G solvation = -12811.478711 eV Core-core repulsion = 10670.037608 eV Total energy + Delta-G solvation = -2141.441103 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.13149 -38.28059 -34.38973 -34.10640 -32.01174 -30.48806 -27.02442 -24.24469 -23.58818 -22.70531 -20.19660 -18.60734 -17.95755 -17.45024 -16.58119 -15.80328 -15.47979 -15.07153 -14.68158 -14.22802 -13.69688 -13.19443 -13.15452 -12.95538 -12.78867 -12.39468 -11.98937 -11.83115 -11.39746 -11.29359 -11.06175 -10.74066 -10.60978 -9.43393 -8.24871 -6.26317 0.89351 1.31597 1.38340 1.46726 2.04566 2.34719 3.11467 3.35074 3.50958 3.74144 4.05996 4.24559 4.32061 4.39955 4.49477 4.56680 4.83581 4.91194 5.00747 5.08690 5.28946 5.29598 5.47493 5.61359 5.75789 6.34040 6.69396 6.79377 7.38635 7.46892 8.91300 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.057825 B = 0.013197 C = 0.012428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.105857 B = 2121.200763 C = 2252.450248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.016 3.984 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.252 1.252 6 H -0.306 1.306 7 C -0.500 4.500 8 H 0.043 0.957 9 C 0.009 3.991 10 H 0.026 0.974 11 C -0.113 4.113 12 C -0.076 4.076 13 C 0.018 3.982 14 H 0.084 0.916 15 N -0.260 5.260 16 N 0.064 4.936 17 N -0.660 5.660 18 C 0.124 3.876 19 H 0.093 0.907 20 C -0.092 4.092 21 H 0.263 0.737 22 H 0.040 0.960 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.445 0.555 27 H 0.056 0.944 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.210 -4.620 -2.599 10.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.180 4.180 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.176 1.176 6 H -0.235 1.235 7 C -0.538 4.538 8 H 0.061 0.939 9 C -0.011 4.011 10 H 0.044 0.956 11 C -0.150 4.150 12 C -0.115 4.115 13 C -0.093 4.093 14 H 0.102 0.898 15 N -0.170 5.170 16 N 0.071 4.929 17 N -0.419 5.419 18 C 0.016 3.984 19 H 0.111 0.889 20 C -0.131 4.131 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.294 0.706 27 H 0.075 0.925 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.867 -4.545 -3.346 11.367 hybrid contribution -1.219 0.691 1.073 1.765 sum 8.648 -3.854 -2.272 9.737 Atomic orbital electron populations 1.70028 1.07988 1.27685 1.53206 1.25745 0.95195 1.02387 0.94721 0.85988 0.78980 0.79757 0.78423 1.19381 1.17633 1.23500 1.21275 0.90660 0.92916 1.48999 0.93899 1.18424 0.94864 0.93517 0.94276 0.95554 1.21088 0.99030 0.98420 0.96458 1.19779 1.02089 0.91517 0.98158 1.21917 0.94039 0.98657 0.94652 0.89813 1.77533 1.08544 1.08929 1.21969 1.77717 1.15931 1.05051 0.94186 1.51171 1.27818 1.33118 1.29761 1.21479 0.91098 0.90757 0.95039 0.88880 1.20747 1.00051 0.96111 0.96204 0.92805 0.94203 0.92935 0.90356 0.92053 0.70603 0.92492 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.02 13.96 21.45 0.30 -56.72 15 2 C 0.02 0.91 5.44 84.65 0.46 1.37 15 3 Si 0.94 43.69 24.30 68.60 1.67 45.36 15 4 H -0.27 -11.87 6.86 99.48 0.68 -11.19 15 5 H -0.25 -10.95 6.50 99.48 0.65 -10.31 15 6 H -0.31 -14.50 7.11 99.48 0.71 -13.79 15 7 C -0.50 -26.16 8.18 25.60 0.21 -25.95 15 8 H 0.04 2.45 7.97 -2.91 -0.02 2.43 15 9 C 0.01 0.37 2.03 -12.78 -0.03 0.34 15 10 H 0.03 1.17 7.28 -2.39 -0.02 1.15 15 11 C -0.11 -4.54 4.82 29.46 0.14 -4.39 15 12 C -0.08 -2.85 5.15 28.61 0.15 -2.71 15 13 C 0.02 0.63 3.31 43.16 0.14 0.78 15 14 H 0.08 2.87 8.05 -2.39 -0.02 2.85 15 15 N -0.26 -8.70 12.43 -178.27 -2.22 -10.92 15 16 N 0.06 2.00 13.30 37.02 0.49 2.49 15 17 N -0.66 -18.18 7.34 -170.39 -1.25 -19.43 15 18 C 0.12 4.10 3.90 43.33 0.17 4.27 15 19 H 0.09 3.11 8.14 -2.39 -0.02 3.09 15 20 C -0.09 -3.30 4.80 29.19 0.14 -3.16 15 21 H 0.26 15.02 8.31 -92.71 -0.77 14.25 15 22 H 0.04 1.70 2.67 -2.38 -0.01 1.70 15 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 24 H 0.08 2.64 8.05 -2.38 -0.02 2.62 15 25 H 0.06 2.51 7.91 -2.39 -0.02 2.50 15 26 H 0.45 9.30 8.96 -213.58 -1.91 7.38 15 27 H 0.06 1.88 7.86 -2.38 -0.02 1.86 15 28 H 0.06 2.25 8.06 -2.39 -0.02 2.23 15 Total: -1.00 -59.55 220.82 -0.45 -60.01 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -0.83 Total: 8.67 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 1.39 Total: -29.45 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -2.67 Total: -84.58 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.67 Total: 45.36 kcal Total: -59.55 -0.45 -60.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261067064.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.291 kcal (2) G-P(sol) polarization free energy of solvation -59.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds