Wall clock time and date at job start Mon Mar 30 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 111.00179 * 2 1 4 4 H 1.09000 * 109.47162 * 185.64164 * 3 2 1 5 5 C 1.50697 * 109.46950 * 305.63823 * 3 2 1 6 6 H 1.08003 * 119.99768 * 119.99317 * 5 3 2 7 7 C 1.37871 * 120.00179 * 300.00169 * 5 3 2 8 8 N 1.31516 * 120.00293 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00304 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47075 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47238 * 119.99563 * 9 7 5 12 12 H 1.48501 * 109.47546 * 240.00228 * 9 7 5 13 13 C 1.50700 * 109.47117 * 65.64043 * 3 2 1 14 14 C 1.39865 * 125.90025 * 111.40438 * 13 3 2 15 15 C 1.35320 * 107.92045 * 180.21908 * 14 13 3 16 16 C 1.50699 * 126.12506 * 179.76028 * 15 14 13 17 17 N 1.34950 * 107.74540 * 359.61093 * 15 14 13 18 18 H 0.96993 * 126.03614 * 180.14630 * 17 15 14 19 19 N 1.30842 * 125.89323 * 291.38011 * 13 3 2 20 20 H 1.08997 * 109.47125 * 64.36446 * 1 2 3 21 21 H 1.08999 * 109.47204 * 184.36331 * 1 2 3 22 22 H 1.08995 * 109.46877 * 304.36238 * 1 2 3 23 23 H 1.00903 * 110.99605 * 123.95409 * 2 1 3 24 24 H 0.96995 * 120.00257 * 180.02562 * 8 7 5 25 25 H 1.07995 * 126.04167 * 359.95731 * 14 13 3 26 26 H 1.08998 * 109.47134 * 90.00040 * 16 15 14 27 27 H 1.09001 * 109.46817 * 209.99918 * 16 15 14 28 28 H 1.08993 * 109.47559 * 329.99788 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0805 1.3441 -0.1010 5 6 1.4027 2.1370 -1.1547 6 1 0.8184 3.0263 -0.9698 7 6 1.6060 1.7022 -2.4471 8 7 2.3169 0.6189 -2.6723 9 14 0.8706 2.6508 -3.8785 10 1 0.1184 3.8223 -3.3616 11 1 1.9589 3.1170 -4.7747 12 1 -0.0509 1.7670 -4.6368 13 6 1.6284 2.0504 1.2943 14 6 2.5185 2.4191 2.3082 15 6 1.8026 2.9949 3.3017 16 6 2.3544 3.5382 4.5946 17 7 0.5065 2.9986 2.9259 18 1 -0.2359 3.3516 3.4406 19 7 0.4220 2.3972 1.6634 20 1 -0.3633 0.4446 -0.9265 21 1 -0.3633 -1.0247 0.0782 22 1 -0.3633 0.5800 0.8483 23 1 1.8306 -0.5262 0.7814 24 1 2.4603 0.3132 -3.5816 25 1 3.5877 2.2669 2.3015 26 1 2.6151 4.5886 4.4654 27 1 1.6027 3.4441 5.3783 28 1 3.2442 2.9748 4.8751 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108499.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:05 Heat of formation + Delta-G solvation = 52.601127 kcal Electronic energy + Delta-G solvation = -12307.856787 eV Core-core repulsion = 10166.559483 eV Total energy + Delta-G solvation = -2141.297305 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.00945 -37.39934 -33.93850 -33.00671 -31.86536 -28.89352 -27.73115 -26.30403 -23.78306 -21.35938 -20.36363 -18.28754 -17.95292 -16.65367 -16.26382 -15.79841 -14.73652 -14.69129 -14.52706 -14.18060 -13.67144 -13.35431 -13.17509 -12.96969 -12.69295 -12.47366 -12.20263 -11.85174 -11.44025 -11.05986 -10.47585 -10.04288 -9.41580 -8.72995 -7.96421 -6.12591 1.09494 1.41047 1.43138 1.53935 2.00031 2.19969 2.49772 3.27346 3.93599 4.07167 4.12584 4.39528 4.78403 4.79541 4.80760 4.99293 5.08357 5.14976 5.20300 5.38094 5.58560 5.79105 5.85819 6.16084 6.60306 6.66357 6.90816 6.99652 7.28287 7.55241 9.08179 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.049453 B = 0.010800 C = 0.010218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.063901 B = 2592.084764 C = 2739.650822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.658 5.658 3 C 0.288 3.712 4 H 0.033 0.967 5 C -0.528 4.528 6 H 0.036 0.964 7 C 0.038 3.962 8 N -0.877 5.877 9 Si 0.943 3.057 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.281 1.281 13 C 0.057 3.943 14 C -0.304 4.304 15 C 0.091 3.909 16 C -0.082 4.082 17 N -0.485 5.485 18 H 0.443 0.557 19 N -0.320 5.320 20 H 0.037 0.963 21 H 0.050 0.950 22 H 0.023 0.977 23 H 0.311 0.689 24 H 0.257 0.743 25 H 0.148 0.852 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 4.144 12.926 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.286 5.286 3 C 0.178 3.822 4 H 0.051 0.949 5 C -0.568 4.568 6 H 0.055 0.945 7 C -0.166 4.166 8 N -0.514 5.514 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.206 1.206 13 C -0.111 4.111 14 C -0.333 4.333 15 C -0.039 4.039 16 C -0.140 4.140 17 N -0.194 5.194 18 H 0.288 0.712 19 N -0.143 5.143 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.041 0.959 23 H 0.126 0.874 24 H 0.066 0.934 25 H 0.166 0.834 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.697 3.945 11.761 12.520 hybrid contribution -0.096 0.770 0.258 0.818 sum -1.793 4.715 12.019 13.035 Atomic orbital electron populations 1.21841 0.89196 0.98428 0.99874 1.60788 1.07281 1.14619 1.45892 1.17662 0.94662 0.84325 0.85505 0.94949 1.20959 1.34382 1.10221 0.91210 0.94550 1.25556 0.95171 0.95341 1.00494 1.70204 1.38408 1.22583 1.20170 0.85770 0.78493 0.78766 0.80078 1.20302 1.20076 1.20640 1.24048 0.90900 0.97439 0.98734 1.21488 1.01175 1.14545 0.96140 1.21676 0.84827 0.98867 0.98529 1.20558 1.02312 1.02048 0.89086 1.46538 1.07754 1.49300 1.15852 0.71180 1.77368 1.22529 1.18513 0.95935 0.94438 0.93160 0.95851 0.87384 0.93420 0.83414 0.88982 0.89095 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.72 10.03 127.69 1.28 4.00 15 2 N -0.66 -33.33 6.13 -522.48 -3.20 -36.53 15 3 C 0.29 15.35 2.88 43.42 0.12 15.48 15 4 H 0.03 1.86 8.12 -2.39 -0.02 1.84 15 5 C -0.53 -30.82 7.00 25.60 0.18 -30.64 15 6 H 0.04 2.21 7.73 -2.91 -0.02 2.19 15 7 C 0.04 2.18 5.24 84.65 0.44 2.62 15 8 N -0.88 -52.24 12.77 21.45 0.27 -51.97 15 9 Si 0.94 45.65 29.54 68.60 2.03 47.68 15 10 H -0.28 -13.47 7.11 99.48 0.71 -12.77 15 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 12 H -0.28 -13.31 7.11 99.48 0.71 -12.61 15 13 C 0.06 2.65 5.57 43.10 0.24 2.89 15 14 C -0.30 -11.55 10.64 21.99 0.23 -11.31 15 15 C 0.09 2.70 7.21 41.41 0.30 3.00 15 16 C -0.08 -1.37 10.43 71.24 0.74 -0.62 15 17 N -0.48 -15.79 7.36 -48.00 -0.35 -16.14 15 18 H 0.44 10.67 8.96 -213.33 -1.91 8.76 15 19 N -0.32 -14.20 10.51 -47.39 -0.50 -14.70 15 20 H 0.04 2.00 6.99 -2.39 -0.02 1.98 15 21 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.02 1.11 5.65 -2.39 -0.01 1.09 15 23 H 0.31 14.16 8.83 -89.69 -0.79 13.37 15 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 15 25 H 0.15 5.11 8.06 -2.91 -0.02 5.09 15 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 15 27 H 0.09 1.08 8.14 -2.39 -0.02 1.07 15 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 15 Total: -1.00 -70.09 241.84 0.26 -69.83 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -1.53 Total: 16.41 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 3.54 Total: -14.58 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -3.78 Total: -119.34 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.09 0.26 -69.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108499.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.432 kcal (2) G-P(sol) polarization free energy of solvation -70.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds