Wall clock time and date at job start Mon Mar 30 2020 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47156 * 2 1 4 4 C 1.35458 * 126.77746 * 90.29609 * 3 2 1 5 5 C 1.41375 * 103.98452 * 180.13818 * 4 3 2 6 6 C 1.50707 * 126.79851 * 179.89070 * 5 4 3 7 7 H 1.08996 * 109.46951 * 154.71144 * 6 5 4 8 8 C 1.53002 * 109.46982 * 34.71227 * 6 5 4 9 9 C 1.50696 * 109.46819 * 274.71037 * 6 5 4 10 10 H 1.08001 * 120.00763 * 5.62461 * 9 6 5 11 11 C 1.37885 * 119.99715 * 185.62253 * 9 6 5 12 12 N 1.31515 * 120.00050 * 197.59793 * 11 9 6 13 13 Si 1.86801 * 119.99894 * 17.60473 * 11 9 6 14 14 H 1.48500 * 109.46852 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.46916 * 299.99518 * 13 11 9 16 16 H 1.48494 * 109.47174 * 59.99830 * 13 11 9 17 17 N 1.30166 * 106.39728 * 359.62951 * 5 4 3 18 18 O 1.20920 * 111.60753 * 0.23737 * 17 5 4 19 19 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47361 * 300.00141 * 1 2 3 21 21 H 1.08998 * 109.46991 * 60.00090 * 1 2 3 22 22 H 1.09003 * 109.47001 * 239.99609 * 2 1 3 23 23 H 1.09006 * 109.46618 * 120.00420 * 2 1 3 24 24 H 1.07998 * 128.00203 * 0.02562 * 4 3 2 25 25 H 1.08998 * 109.46733 * 186.06898 * 8 6 5 26 26 H 1.09001 * 109.46952 * 306.06333 * 8 6 5 27 27 H 1.09000 * 109.47265 * 66.06481 * 8 6 5 28 28 H 0.97004 * 120.00098 * 354.81249 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3080 2.1835 1.0850 5 6 2.7366 3.4144 0.5373 6 6 3.1701 4.6397 1.3001 7 1 3.8408 5.2350 0.6806 8 6 3.8981 4.2145 2.5769 9 6 1.9592 5.4606 1.6619 10 1 0.9691 5.0852 1.4495 11 6 2.1154 6.6911 2.2640 12 7 1.1022 7.2512 2.8880 13 14 3.7661 7.5628 2.1932 14 1 3.6721 8.8597 2.9105 15 1 4.8016 6.7147 2.8363 16 1 4.1364 7.8072 0.7761 17 7 2.6881 3.2777 -0.7563 18 8 2.2995 2.1775 -1.0736 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.2189 1.9143 2.1270 25 1 4.1164 5.0951 3.1810 26 1 3.2664 3.5317 3.1451 27 1 4.8300 3.7139 2.3143 28 1 0.2262 6.8355 2.8609 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261121749.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:41 Heat of formation + Delta-G solvation = 39.236732 kcal Electronic energy + Delta-G solvation = -12149.329797 eV Core-core repulsion = 9975.160218 eV Total energy + Delta-G solvation = -2174.169579 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.17654 -35.37776 -34.50805 -32.46948 -30.33239 -29.60902 -24.91582 -23.82985 -23.11881 -21.20487 -18.78419 -17.54102 -16.84482 -16.42901 -14.71372 -14.36803 -13.82790 -13.39389 -13.03229 -12.77260 -12.46688 -12.05221 -11.62749 -11.32908 -11.22643 -10.94629 -10.59325 -10.40570 -9.89075 -9.74955 -9.34602 -8.90807 -8.70084 -8.21758 -6.50195 -4.11569 2.09294 3.13995 3.36656 3.44240 3.60198 3.68636 4.45961 4.85674 5.05813 5.19125 5.23023 5.25802 5.51631 5.73339 5.83041 5.91395 6.13322 6.19315 6.28500 6.35066 6.48770 6.67767 6.90860 7.08486 7.35767 7.98084 8.33580 8.84552 9.09883 9.56096 10.89780 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.056833 B = 0.009760 C = 0.009309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.550344 B = 2868.154478 C = 3006.966410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.035 4.035 3 C -0.060 4.060 4 C -0.222 4.222 5 C 0.076 3.924 6 C 0.082 3.918 7 H 0.037 0.963 8 C -0.143 4.143 9 C -0.592 4.592 10 H 0.055 0.945 11 C 0.034 3.966 12 N -0.902 5.902 13 Si 1.045 2.955 14 H -0.284 1.284 15 H -0.272 1.272 16 H -0.282 1.282 17 N -0.385 5.385 18 O 0.081 5.919 19 H 0.063 0.937 20 H 0.060 0.940 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.162 0.838 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.025 0.975 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -12.901 -2.845 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.073 4.073 3 C -0.124 4.124 4 C -0.243 4.243 5 C -0.083 4.083 6 C 0.062 3.938 7 H 0.055 0.945 8 C -0.201 4.201 9 C -0.631 4.631 10 H 0.073 0.927 11 C -0.171 4.171 12 N -0.536 5.536 13 Si 0.873 3.127 14 H -0.210 1.210 15 H -0.198 1.198 16 H -0.208 1.208 17 N -0.092 5.092 18 O 0.019 5.981 19 H 0.082 0.918 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.179 0.821 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.535 -10.766 -3.362 11.820 hybrid contribution -1.127 -1.651 0.255 2.015 sum 2.408 -12.417 -3.108 13.024 Atomic orbital electron populations 1.21789 0.94042 1.01990 1.02996 1.19958 0.96276 0.87265 1.03823 1.24342 1.04085 0.96847 0.87100 1.22365 1.07675 0.93948 1.00320 1.24049 0.97797 0.97456 0.89005 1.17643 0.97237 0.87908 0.91048 0.94475 1.22197 0.97632 1.01149 0.99125 1.21778 0.91754 1.04212 1.45338 0.92679 1.25781 1.04951 0.94737 0.91662 1.70865 1.02260 1.44457 1.36005 0.84044 0.75062 0.76490 0.77098 1.20953 1.19849 1.20797 1.73779 1.19487 0.98662 1.17298 1.84758 1.62382 1.17927 1.33049 0.91780 0.92050 0.92199 0.90030 0.89179 0.82058 0.91946 0.93351 0.95544 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.89 37.16 0.37 -1.24 15 2 C -0.03 -0.40 6.50 -27.89 -0.18 -0.58 15 3 C -0.06 -1.01 6.74 -35.30 -0.24 -1.25 15 4 C -0.22 -4.31 10.23 -39.38 -0.40 -4.72 15 5 C 0.08 1.77 6.16 -82.10 -0.51 1.26 15 6 C 0.08 2.05 2.35 -92.92 -0.22 1.83 15 7 H 0.04 0.96 6.79 -51.93 -0.35 0.60 15 8 C -0.14 -3.15 8.61 37.16 0.32 -2.83 15 9 C -0.59 -17.16 8.81 -34.44 -0.30 -17.46 15 10 H 0.05 1.75 7.99 -52.49 -0.42 1.33 15 11 C 0.03 0.99 5.29 -17.82 -0.09 0.90 15 12 N -0.90 -27.83 13.70 55.43 0.76 -27.07 15 13 Si 1.05 25.34 26.30 -169.99 -4.47 20.87 15 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 15 H -0.27 -5.99 5.76 56.52 0.33 -5.67 15 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 17 N -0.38 -8.95 12.07 33.42 0.40 -8.55 15 18 O 0.08 1.61 11.20 17.18 0.19 1.80 15 19 H 0.06 0.52 8.14 -51.93 -0.42 0.10 15 20 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.08 0.79 8.14 -51.93 -0.42 0.36 15 23 H 0.09 0.86 8.14 -51.93 -0.42 0.43 15 24 H 0.16 2.80 7.50 -52.49 -0.39 2.41 15 25 H 0.06 1.41 4.89 -51.93 -0.25 1.15 15 26 H 0.05 1.01 7.17 -51.93 -0.37 0.63 15 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 15 28 H 0.27 8.26 8.73 -40.82 -0.36 7.90 15 LS Contribution 239.72 15.07 3.61 3.61 Total: -1.00 -31.92 239.72 -4.31 -36.24 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -3.56 Total: -2.82 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -1.26 Total: -24.09 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 1.16 Total: -35.62 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: 0.19 Total: 1.80 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -4.47 Total: 20.87 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.92 -4.31 -36.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121749.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.475 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds