Wall clock time and date at job start Mon Mar 30 2020 02:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00177 * 2 1 4 4 C 1.52996 * 109.47290 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47038 * 59.99990 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00420 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.71978 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.50700 * 109.47483 * 300.00131 * 3 2 1 14 14 C 1.34517 * 125.78310 * 329.71461 * 13 3 2 15 15 C 1.41385 * 106.83697 * 179.88954 * 14 13 3 16 16 C 1.34516 * 106.84068 * 0.36912 * 15 14 13 17 17 O 1.34296 * 125.79277 * 150.01911 * 13 3 2 18 18 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.47312 * 300.00004 * 1 2 3 20 20 H 1.09001 * 109.46925 * 59.99745 * 1 2 3 21 21 H 1.00902 * 110.99558 * 123.95576 * 2 1 3 22 22 H 1.09001 * 109.47094 * 300.00380 * 4 3 2 23 23 H 1.09003 * 109.46851 * 60.00406 * 4 3 2 24 24 H 1.09003 * 109.47532 * 180.02562 * 4 3 2 25 25 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.07998 * 126.58342 * 0.02685 * 14 13 3 27 27 H 1.07996 * 126.58160 * 180.16738 * 15 14 13 28 28 H 1.07997 * 125.79264 * 179.74700 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 6 1.5122 2.0950 1.2305 6 1 0.9149 2.9893 1.1315 7 6 1.8278 1.6119 2.4828 8 7 2.5551 0.5229 2.6034 9 14 1.2224 2.5045 4.0079 10 1 0.4295 3.6932 3.6038 11 1 0.3699 1.5909 4.8104 12 1 2.3860 2.9385 4.8222 13 6 1.5123 2.0951 -1.2304 14 6 1.2400 1.5289 -2.4198 15 6 0.8172 2.5677 -3.2807 16 6 0.8644 3.7077 -2.5682 17 8 1.2860 3.4153 -1.3271 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 1.8305 -0.5262 0.7814 22 1 3.8740 0.8073 0.8908 23 1 3.8747 0.8071 -0.8892 24 1 3.9156 2.3482 0.0011 25 1 2.7774 0.1832 3.4844 26 1 1.3255 0.4814 -2.6688 27 1 0.5175 2.4660 -4.3133 28 1 0.6072 4.6913 -2.9325 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148731.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:28 Heat of formation + Delta-G solvation = 17.086981 kcal Electronic energy + Delta-G solvation = -12761.670115 eV Core-core repulsion = 10586.540050 eV Total energy + Delta-G solvation = -2175.130065 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.65349 -36.34710 -32.28257 -31.62683 -29.89939 -27.56001 -25.33379 -23.39796 -21.51666 -20.77345 -18.94478 -16.80954 -15.88955 -15.14050 -14.83981 -13.86230 -13.50180 -13.12160 -12.55951 -12.21983 -11.85330 -11.75793 -11.32503 -10.98643 -10.93890 -10.78228 -10.42403 -10.13205 -9.84671 -9.58481 -9.02490 -8.63049 -7.45709 -7.08374 -6.11211 -4.28064 2.67155 3.20332 3.29355 3.35056 3.52145 3.95207 4.30671 5.08942 5.60665 5.79317 5.92926 6.04175 6.50653 6.66436 6.76398 6.79339 6.85868 6.98063 7.02836 7.10056 7.24434 7.47592 7.67432 7.83815 7.98030 8.11058 8.59309 8.79322 8.99677 9.42853 10.83826 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.043522 B = 0.014031 C = 0.012743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.191203 B = 1995.100617 C = 2196.798534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.683 5.683 3 C 0.297 3.703 4 C -0.124 4.124 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.060 3.940 14 C -0.236 4.236 15 C -0.218 4.218 16 C -0.084 4.084 17 O -0.168 6.168 18 H 0.037 0.963 19 H 0.027 0.973 20 H 0.046 0.954 21 H 0.365 0.635 22 H 0.092 0.908 23 H 0.023 0.977 24 H 0.034 0.966 25 H 0.266 0.734 26 H 0.142 0.858 27 H 0.134 0.866 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.909 1.615 -5.312 5.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.319 5.319 3 C 0.207 3.793 4 C -0.182 4.182 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.133 4.133 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.207 1.207 13 C 0.008 3.992 14 C -0.255 4.255 15 C -0.237 4.237 16 C -0.152 4.152 17 O -0.063 6.063 18 H 0.056 0.944 19 H 0.046 0.954 20 H 0.065 0.935 21 H 0.189 0.811 22 H 0.110 0.890 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.160 0.840 27 H 0.152 0.848 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.732 1.628 -5.613 6.096 hybrid contribution -0.676 0.728 1.447 1.755 sum -2.408 2.356 -4.166 5.357 Atomic orbital electron populations 1.21945 0.90792 0.98477 1.00141 1.60782 1.06023 1.14480 1.50583 1.17055 0.91925 0.85194 0.85086 1.21723 0.95094 0.99869 1.01494 1.21719 1.33386 1.11547 0.90654 0.92171 1.24944 0.94262 0.94998 0.99069 1.69655 1.37637 1.21890 1.24019 0.86435 0.78689 0.79845 0.82521 1.19732 1.20922 1.20746 1.23280 0.98245 0.79616 0.98028 1.21461 1.10488 1.00185 0.93369 1.21719 1.08086 0.93309 1.00578 1.23745 1.07584 0.99841 0.84007 1.84070 1.65032 1.26589 1.30605 0.94415 0.95427 0.93522 0.81149 0.88964 0.95762 0.94647 0.92400 0.83971 0.84843 0.79559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.00 60.06 0.60 1.42 15 2 N -0.68 -16.23 6.07 -109.57 -0.66 -16.89 15 3 C 0.30 7.40 0.62 -133.91 -0.08 7.31 15 4 C -0.12 -3.00 8.49 37.16 0.32 -2.68 15 5 C -0.53 -14.35 6.55 -34.44 -0.23 -14.58 15 6 H 0.06 1.70 7.34 -52.49 -0.39 1.31 15 7 C 0.07 1.82 5.23 -17.82 -0.09 1.73 15 8 N -0.89 -23.39 9.57 55.43 0.53 -22.86 15 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 15 10 H -0.27 -6.43 7.11 56.52 0.40 -6.02 15 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 13 C 0.06 1.41 4.92 -35.62 -0.18 1.24 15 14 C -0.24 -4.97 8.89 -39.70 -0.35 -5.32 15 15 C -0.22 -3.97 10.91 -39.70 -0.43 -4.40 15 16 C -0.08 -1.54 12.09 29.42 0.36 -1.19 15 17 O -0.17 -3.84 10.00 5.72 0.06 -3.79 15 18 H 0.04 0.74 8.14 -51.93 -0.42 0.31 15 19 H 0.03 0.66 7.09 -51.93 -0.37 0.29 15 20 H 0.05 1.02 6.11 -51.93 -0.32 0.70 15 21 H 0.37 9.12 6.80 -39.29 -0.27 8.86 15 22 H 0.09 2.35 6.08 -51.93 -0.32 2.03 15 23 H 0.02 0.54 8.14 -51.93 -0.42 0.11 15 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 26 H 0.14 2.92 8.05 -52.49 -0.42 2.49 15 27 H 0.13 1.99 8.06 -52.49 -0.42 1.57 15 28 H 0.19 2.55 8.06 -52.49 -0.42 2.12 15 LS Contribution 234.54 15.07 3.53 3.53 Total: -1.00 -27.35 234.54 -4.98 -32.33 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.33 Total: 8.31 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -0.09 Total: -16.47 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.13 Total: -39.75 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: 0.06 Total: -3.79 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -27.35 -4.98 -32.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148731.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.420 kcal (2) G-P(sol) polarization free energy of solvation -27.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds