Wall clock time and date at job start Mon Mar 30 2020 02:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47127 * 2 1 4 4 N 1.30258 * 125.61806 * 90.02396 * 3 2 1 5 5 C 1.34485 * 108.70349 * 179.97438 * 4 3 2 6 6 C 1.34334 * 107.66149 * 0.02562 * 5 4 3 7 7 C 1.50703 * 126.43831 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46994 * 0.02562 * 7 6 5 9 9 C 1.53008 * 109.47145 * 119.99832 * 7 6 5 10 10 C 1.50697 * 109.47244 * 239.99933 * 7 6 5 11 11 H 1.08000 * 119.99898 * 0.02562 * 10 7 6 12 12 C 1.37874 * 120.00130 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00114 * 179.97438 * 12 10 7 14 14 Si 1.86800 * 119.99905 * 0.02562 * 12 10 7 15 15 H 1.48500 * 109.47053 * 89.99799 * 14 12 10 16 16 H 1.48503 * 109.46917 * 209.99513 * 14 12 10 17 17 H 1.48491 * 109.47402 * 329.99549 * 14 12 10 18 18 O 1.33971 * 125.62211 * 269.97677 * 3 2 1 19 19 H 1.08995 * 109.47454 * 300.00120 * 1 2 3 20 20 H 1.09008 * 109.47041 * 60.00321 * 1 2 3 21 21 H 1.09000 * 109.47265 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47238 * 240.00005 * 2 1 3 23 23 H 1.09001 * 109.47114 * 120.00084 * 2 1 3 24 24 H 1.07995 * 126.16920 * 179.73871 * 5 4 3 25 25 H 1.08991 * 109.46945 * 180.02562 * 9 7 6 26 26 H 1.08999 * 109.46699 * 299.99983 * 9 7 6 27 27 H 1.08998 * 109.46661 * 59.99522 * 9 7 6 28 28 H 0.96998 * 120.00177 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2855 2.1358 1.0589 5 6 2.7148 3.3488 0.6676 6 6 2.7199 3.3655 -0.6756 7 6 3.1275 4.5196 -1.5548 8 1 3.4265 5.3628 -0.9322 9 6 4.3027 4.0971 -2.4389 10 6 1.9648 4.9239 -2.4242 11 1 1.0246 4.3980 -2.3474 12 6 2.1010 5.9658 -3.3168 13 7 1.0865 6.3183 -4.0759 14 14 3.7269 6.8759 -3.4491 15 1 4.5812 6.2172 -4.4698 16 1 3.4750 8.2839 -3.8484 17 1 4.4171 6.8501 -2.1346 18 8 2.2928 2.1563 -1.0890 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.9993 4.1640 1.3163 25 1 4.5977 4.9320 -3.0744 26 1 5.1436 3.8048 -1.8100 27 1 4.0041 3.2537 -3.0615 28 1 1.1822 7.0515 -4.7036 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:34 Heat of formation + Delta-G solvation = -13.844210 kcal Electronic energy + Delta-G solvation = -12169.175734 eV Core-core repulsion = 9992.704393 eV Total energy + Delta-G solvation = -2176.471342 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.19021 -36.79141 -35.66110 -34.68864 -33.53722 -29.51837 -27.22476 -25.42909 -23.80841 -22.52408 -21.40651 -18.86676 -17.85277 -17.55219 -16.74144 -15.77923 -15.43434 -15.00598 -14.72796 -14.43895 -14.10868 -13.55719 -13.15227 -13.11240 -12.65340 -12.57990 -12.19897 -12.10917 -12.01849 -11.65780 -11.43836 -11.25773 -10.80724 -9.47695 -8.36733 -6.45890 0.64784 1.32382 1.37589 1.48945 1.76997 1.90817 2.28519 2.97967 3.20114 3.92060 4.14283 4.25753 4.28417 4.40274 4.48985 4.57285 4.72384 4.85283 4.92192 4.99502 5.01874 5.19344 5.27614 5.41840 5.51389 5.53102 6.15262 6.57197 6.83662 7.18741 8.80342 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.054911 B = 0.010172 C = 0.009364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.791479 B = 2751.900888 C = 2989.299510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.020 4.020 3 C 0.159 3.841 4 N -0.501 5.501 5 C -0.078 4.078 6 C -0.004 4.004 7 C 0.083 3.917 8 H 0.076 0.924 9 C -0.144 4.144 10 C -0.530 4.530 11 H 0.021 0.979 12 C 0.016 3.984 13 N -0.945 5.945 14 Si 0.956 3.044 15 H -0.262 1.262 16 H -0.294 1.294 17 H -0.234 1.234 18 O -0.214 6.214 19 H 0.051 0.949 20 H 0.039 0.961 21 H 0.105 0.895 22 H 0.107 0.893 23 H 0.124 0.876 24 H 0.200 0.800 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.275 -9.198 6.785 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.058 4.058 3 C -0.048 4.048 4 N -0.230 5.230 5 C -0.215 4.215 6 C -0.057 4.057 7 C 0.064 3.936 8 H 0.094 0.906 9 C -0.201 4.201 10 C -0.567 4.567 11 H 0.040 0.960 12 C -0.182 4.182 13 N -0.584 5.584 14 Si 0.781 3.219 15 H -0.187 1.187 16 H -0.222 1.222 17 H -0.157 1.157 18 O -0.101 6.101 19 H 0.070 0.930 20 H 0.059 0.941 21 H 0.123 0.877 22 H 0.126 0.874 23 H 0.142 0.858 24 H 0.217 0.783 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.124 -9.325 7.235 12.867 hybrid contribution 0.108 1.059 -1.133 1.555 sum 5.232 -8.265 6.102 11.529 Atomic orbital electron populations 1.21772 0.92863 1.04213 1.01556 1.20276 0.97000 0.81975 1.06548 1.27280 1.00691 0.98433 0.78412 1.70302 1.17544 1.04245 1.30948 1.23296 1.08172 0.97072 0.92948 1.23940 1.00577 0.85605 0.95561 1.17959 0.94282 0.88445 0.92943 0.90647 1.22081 0.97494 1.00819 0.99685 1.20991 0.97269 1.17068 1.21404 0.96046 1.25936 1.00986 0.97182 0.94047 1.70038 1.33736 1.29845 1.24792 0.85740 0.78865 0.76480 0.80815 1.18732 1.22191 1.15737 1.84397 1.63894 1.23303 1.38548 0.92966 0.94140 0.87679 0.87427 0.85773 0.78329 0.93332 0.91247 0.93429 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.89 71.98 0.71 -2.57 15 2 C -0.02 -0.48 6.56 29.84 0.20 -0.29 15 3 C 0.16 5.80 7.60 88.34 0.67 6.48 15 4 N -0.50 -19.45 11.29 -303.82 -3.43 -22.88 15 5 C -0.08 -3.11 11.79 83.39 0.98 -2.12 15 6 C 0.00 -0.16 5.83 24.79 0.14 -0.02 15 7 C 0.08 3.86 2.31 -12.28 -0.03 3.83 15 8 H 0.08 3.29 7.17 -2.39 -0.02 3.27 15 9 C -0.14 -5.91 8.66 71.98 0.62 -5.29 15 10 C -0.53 -30.71 9.13 25.60 0.23 -30.47 15 11 H 0.02 1.42 7.98 -2.91 -0.02 1.40 15 12 C 0.02 0.95 5.45 84.65 0.46 1.41 15 13 N -0.95 -58.84 13.96 21.45 0.30 -58.54 15 14 Si 0.96 42.72 24.37 68.60 1.67 44.39 15 15 H -0.26 -11.05 6.87 99.48 0.68 -10.36 15 16 H -0.29 -13.12 7.11 99.48 0.71 -12.41 15 17 H -0.23 -9.27 6.53 99.48 0.65 -8.62 15 18 O -0.21 -9.47 10.78 -3.70 -0.04 -9.51 15 19 H 0.05 1.27 8.14 -2.39 -0.02 1.25 15 20 H 0.04 1.07 8.14 -2.38 -0.02 1.05 15 21 H 0.10 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.11 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.12 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.20 6.65 8.06 -2.91 -0.02 6.63 15 25 H 0.05 1.98 3.27 -2.39 -0.01 1.97 15 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 15 Total: -1.00 -69.78 239.90 3.56 -66.23 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.06 Total: 9.35 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 4.00 Total: -29.04 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -3.13 Total: -81.42 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.04 Total: -9.51 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.67 Total: 44.39 kcal Total: -69.78 3.56 -66.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.383 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds