Wall clock time and date at job start Mon Mar 30 2020 02:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30253 * 125.62276 * 2 1 4 4 C 1.34471 * 108.70602 * 180.26292 * 3 2 1 5 5 C 1.34332 * 107.66856 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.44280 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.46959 * 90.00343 * 6 5 4 8 8 H 1.08999 * 109.46702 * 304.99064 * 7 6 5 9 9 C 1.52995 * 109.47228 * 64.99688 * 7 6 5 10 10 C 1.50707 * 109.47021 * 185.00009 * 7 6 5 11 11 H 1.07997 * 119.99493 * 359.97438 * 10 7 6 12 12 C 1.37867 * 119.99885 * 179.97438 * 10 7 6 13 13 N 1.31522 * 119.99886 * 179.97438 * 12 10 7 14 14 Si 1.86799 * 120.00202 * 359.97438 * 12 10 7 15 15 H 1.48504 * 109.47057 * 90.00478 * 14 12 10 16 16 H 1.48498 * 109.47390 * 210.00135 * 14 12 10 17 17 H 1.48493 * 109.47215 * 330.00313 * 14 12 10 18 18 O 1.33974 * 125.62013 * 180.30958 * 2 1 3 19 19 H 1.08997 * 109.47201 * 269.69318 * 1 2 3 20 20 H 1.09002 * 109.47145 * 29.69406 * 1 2 3 21 21 H 1.09003 * 109.47052 * 149.69094 * 1 2 3 22 22 H 1.08005 * 126.16912 * 180.02562 * 4 3 2 23 23 H 1.08999 * 109.46894 * 209.99509 * 6 5 4 24 24 H 1.08991 * 109.47321 * 329.99779 * 6 5 4 25 25 H 1.09009 * 109.46823 * 180.02562 * 9 7 6 26 26 H 1.08994 * 109.47278 * 299.99756 * 9 7 6 27 27 H 1.08999 * 109.47308 * 60.00642 * 9 7 6 28 28 H 0.97000 * 119.99573 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6675 -0.0058 5 6 3.5698 -0.6757 -0.0101 6 6 4.7937 -1.5549 -0.0167 7 6 5.2124 -1.8570 1.4236 8 1 5.3523 -0.9214 1.9651 9 6 4.1230 -2.6847 2.1085 10 6 6.5045 -2.6326 1.4190 11 1 6.9792 -2.8852 0.4824 12 6 7.0804 -3.0197 2.6103 13 7 8.2077 -3.6971 2.6062 14 14 6.2595 -2.5822 4.2302 15 1 5.3212 -3.6658 4.6183 16 1 7.2949 -2.4235 5.2828 17 1 5.5099 -1.3095 4.0774 18 8 2.2872 -1.0891 -0.0059 19 1 -0.3633 -0.0055 1.0276 20 1 -0.3633 0.8927 -0.5091 21 1 -0.3633 -0.8872 -0.5186 22 1 4.4157 1.3162 -0.0069 23 1 4.5679 -2.4881 -0.5326 24 1 5.6063 -1.0425 -0.5315 25 1 4.4212 -2.8994 3.1348 26 1 3.1886 -2.1236 2.1119 27 1 3.9832 -3.6203 1.5671 28 1 8.6131 -3.9691 3.4444 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267242.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:04 Heat of formation + Delta-G solvation = 9.494158 kcal Electronic energy + Delta-G solvation = -12140.950944 eV Core-core repulsion = 9965.491630 eV Total energy + Delta-G solvation = -2175.459314 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.94710 -35.58092 -34.36884 -32.39640 -31.28608 -28.52640 -25.41095 -24.69721 -22.02864 -20.86843 -19.54259 -16.97925 -16.40519 -16.29383 -14.80360 -14.21864 -13.91989 -13.21292 -13.16473 -12.83468 -12.68414 -12.49890 -12.22053 -11.66710 -11.07755 -10.93591 -10.56424 -10.37392 -10.18549 -9.93746 -9.46756 -9.09080 -8.60640 -8.16385 -6.12774 -4.13332 1.84980 3.01561 3.04719 3.25428 3.36545 3.38848 4.34359 4.37464 5.14013 5.20453 5.35309 5.38066 5.50198 5.64549 5.84214 6.00480 6.11097 6.30390 6.37395 6.55248 6.67824 6.71674 6.77849 7.05691 7.40415 7.68046 8.07100 8.42754 8.88969 9.49227 11.00073 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.060764 B = 0.009501 C = 0.009019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.691633 B = 2946.295437 C = 3103.872410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.157 3.843 3 N -0.484 5.484 4 C -0.065 4.065 5 C -0.008 4.008 6 C -0.023 4.023 7 C 0.013 3.987 8 H 0.031 0.969 9 C -0.147 4.147 10 C -0.517 4.517 11 H 0.077 0.923 12 C 0.072 3.928 13 N -0.899 5.899 14 Si 0.889 3.111 15 H -0.279 1.279 16 H -0.297 1.297 17 H -0.267 1.267 18 O -0.200 6.200 19 H 0.086 0.914 20 H 0.095 0.905 21 H 0.083 0.917 22 H 0.181 0.819 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.039 0.961 26 H 0.026 0.974 27 H 0.053 0.947 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 5.439 -3.847 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.050 4.050 3 N -0.214 5.214 4 C -0.203 4.203 5 C -0.061 4.061 6 C -0.061 4.061 7 C -0.006 4.006 8 H 0.049 0.951 9 C -0.204 4.204 10 C -0.555 4.555 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.225 1.225 17 H -0.192 1.192 18 O -0.087 6.087 19 H 0.105 0.895 20 H 0.113 0.887 21 H 0.102 0.898 22 H 0.198 0.802 23 H 0.095 0.905 24 H 0.112 0.888 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.528 5.917 -3.739 14.351 hybrid contribution -0.004 -0.516 1.035 1.156 sum -12.532 5.401 -2.704 13.911 Atomic orbital electron populations 1.20121 0.82020 1.04478 1.04167 1.26085 0.96318 0.79259 1.03295 1.70312 1.02392 1.30534 1.18185 1.22976 0.94675 0.93340 1.09290 1.24211 0.83590 0.95873 1.02469 1.20385 0.87580 0.96982 1.01117 1.19201 0.94827 0.96447 0.90090 0.95059 1.22181 0.97667 1.00493 1.00082 1.20935 1.04706 1.35046 0.94814 0.90502 1.24971 0.94636 0.94317 0.99029 1.69892 1.18398 1.38175 1.27189 0.86822 0.78253 0.79465 0.83515 1.20634 1.22453 1.19224 1.84415 1.17097 1.37457 1.69770 0.89503 0.88660 0.89775 0.80221 0.90501 0.88755 0.94261 0.95527 0.92836 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.50 10.51 36.00 0.38 -0.13 15 2 C 0.16 2.49 8.34 -12.95 -0.11 2.38 15 3 N -0.48 -8.56 11.29 -11.10 -0.13 -8.68 15 4 C -0.06 -1.15 11.80 -17.77 -0.21 -1.36 15 5 C -0.01 -0.15 5.79 -35.69 -0.21 -0.36 15 6 C -0.02 -0.45 5.18 -27.88 -0.14 -0.59 15 7 C 0.01 0.31 1.88 -91.77 -0.17 0.13 15 8 H 0.03 0.75 7.20 -51.93 -0.37 0.38 15 9 C -0.15 -3.28 8.49 37.15 0.32 -2.97 15 10 C -0.52 -14.13 9.14 -34.44 -0.31 -14.44 15 11 H 0.08 2.23 7.99 -52.49 -0.42 1.81 15 12 C 0.07 2.06 5.45 -17.82 -0.10 1.97 15 13 N -0.90 -27.15 13.96 55.43 0.77 -26.38 15 14 Si 0.89 22.14 24.37 -169.99 -4.14 17.99 15 15 H -0.28 -6.81 6.87 56.52 0.39 -6.42 15 16 H -0.30 -7.37 7.11 56.52 0.40 -6.97 15 17 H -0.27 -6.48 6.53 56.52 0.37 -6.11 15 18 O -0.20 -3.60 10.22 5.35 0.05 -3.55 15 19 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.09 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.08 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.18 2.80 8.06 -52.48 -0.42 2.37 15 23 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 24 H 0.09 1.71 8.14 -51.93 -0.42 1.28 15 25 H 0.04 0.91 3.28 -51.92 -0.17 0.74 15 26 H 0.03 0.54 6.93 -51.93 -0.36 0.18 15 27 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 LS Contribution 237.54 15.07 3.58 3.58 Total: -1.00 -31.34 237.54 -3.88 -35.23 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -3.46 Total: -2.83 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.56 Total: -15.37 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.65 Total: -35.06 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: 0.05 Total: -3.55 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.34 -3.88 -35.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267242.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.719 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds