Wall clock time and date at job start Mon Mar 30 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 119.99859 * 2 1 4 4 H 1.48497 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47138 * 299.99952 * 3 2 1 6 6 H 1.48498 * 109.47350 * 59.99898 * 3 2 1 7 7 C 1.40046 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.46380 * 119.99818 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00113 * 0.02562 * 9 7 2 11 11 N 1.34771 * 119.99762 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00017 * 180.02562 * 11 9 7 13 13 H 1.08996 * 110.53623 * 36.15782 * 12 11 9 14 14 C 1.54897 * 110.48588 * 273.54701 * 12 11 9 15 15 C 1.54882 * 102.74839 * 203.37647 * 14 12 11 16 16 C 1.54268 * 104.19625 * 37.94120 * 15 14 12 17 17 H 1.09005 * 117.75680 * 116.74935 * 16 15 14 18 18 C 1.55462 * 118.30387 * 272.80102 * 16 15 14 19 19 C 1.53005 * 59.84054 * 93.29769 * 18 16 15 20 20 H 1.08993 * 119.30394 * 111.70773 * 19 18 16 21 21 H 0.97001 * 120.00427 * 359.97438 * 1 2 3 22 22 H 0.97001 * 120.00577 * 0.02562 * 11 9 7 23 23 H 1.08994 * 110.75328 * 321.69480 * 14 12 11 24 24 H 1.09004 * 110.75215 * 85.06188 * 14 12 11 25 25 H 1.08997 * 110.48961 * 156.62169 * 15 14 12 26 26 H 1.09002 * 110.48969 * 279.26637 * 15 14 12 27 27 H 1.08997 * 118.06552 * 346.16476 * 18 16 15 28 28 H 1.09004 * 117.16473 * 200.82397 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6476 -0.0005 12 6 1.2166 -4.9164 -0.0011 13 1 0.3120 -4.8354 -0.6037 14 6 0.8673 -5.3414 1.4469 15 6 0.6850 -6.8741 1.3187 16 6 1.7754 -7.3021 0.3149 17 1 2.5557 -7.9756 0.6695 18 6 1.4408 -7.2526 -1.2025 19 6 2.1135 -6.0574 -0.5243 20 1 3.1434 -5.8089 -0.7801 21 1 -0.4851 0.8400 0.0004 22 1 2.9191 -3.6477 -0.0002 23 1 1.6857 -5.1051 2.1268 24 1 -0.0582 -4.8684 1.7756 25 1 0.8421 -7.3588 2.2823 26 1 -0.3055 -7.1093 0.9293 27 1 0.3963 -7.1428 -1.4939 28 1 2.0523 -7.8629 -1.8671 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306213562.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:49 Heat of formation + Delta-G solvation = -22.014712 kcal Electronic energy + Delta-G solvation = -12117.294030 eV Core-core repulsion = 9940.468389 eV Total energy + Delta-G solvation = -2176.825641 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.21011 -36.70603 -32.89236 -32.07563 -30.58448 -27.24926 -25.30002 -22.47759 -20.34299 -19.61399 -19.29699 -17.03309 -15.87940 -15.32198 -14.43371 -13.83491 -13.67319 -13.08957 -12.53874 -12.45417 -12.09120 -11.48704 -11.09480 -10.96829 -10.90769 -10.65476 -10.43755 -10.26218 -10.15330 -9.89438 -9.33725 -8.83300 -7.57035 -7.43511 -6.15608 -4.60888 3.14620 3.22707 3.27276 3.84299 4.12705 4.60857 4.69457 4.85369 5.03160 5.36144 5.46348 5.67205 5.78189 5.83004 5.87030 5.94843 6.05868 6.17145 6.23661 6.45765 6.50926 6.72679 6.86841 7.46329 7.98116 8.17757 8.38405 9.05689 9.59631 10.63750 10.82950 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.077869 B = 0.008351 C = 0.008087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.491213 B = 3352.266161 C = 3461.667187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.759 5.759 12 C 0.181 3.819 13 H 0.079 0.921 14 C -0.131 4.131 15 C -0.094 4.094 16 C -0.171 4.171 17 H 0.106 0.894 18 C -0.157 4.157 19 C -0.164 4.164 20 H 0.107 0.893 21 H 0.267 0.733 22 H 0.379 0.621 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 -9.886 0.508 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.413 5.413 12 C 0.075 3.925 13 H 0.097 0.903 14 C -0.170 4.170 15 C -0.132 4.132 16 C -0.189 4.189 17 H 0.124 0.876 18 C -0.194 4.194 19 C -0.182 4.182 20 H 0.125 0.875 21 H 0.078 0.922 22 H 0.211 0.789 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.486 -9.749 0.510 10.366 hybrid contribution 1.049 0.768 -0.011 1.300 sum 4.535 -8.980 0.499 10.073 Atomic orbital electron populations 1.70034 1.07046 1.27073 1.35618 1.25703 0.94597 1.00259 0.92626 0.86332 0.80496 0.81833 0.78174 1.18806 1.20194 1.20195 1.20935 0.93599 0.89469 1.54308 0.91449 1.18223 0.87233 0.82472 0.76161 1.90589 1.14083 1.86848 1.54857 1.46108 1.08363 1.04613 1.82187 1.20916 0.94371 0.82999 0.94251 0.90326 1.23076 1.01986 0.93544 0.98387 1.21906 0.97421 0.96261 0.97609 1.23639 1.01881 1.02027 0.91346 0.87614 1.23401 1.01527 1.00696 0.93772 1.23535 1.00506 0.90342 1.03856 0.87464 0.92221 0.78907 0.91582 0.91097 0.91661 0.91653 0.88922 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.36 11.83 55.55 0.66 -22.71 15 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 15 3 Si 0.91 20.37 29.56 -169.99 -5.02 15.34 15 4 H -0.26 -5.72 7.11 56.52 0.40 -5.32 15 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.55 -15.67 9.54 -35.63 -0.34 -16.01 15 8 H 0.07 1.78 7.85 -52.49 -0.41 1.36 15 9 C 0.56 16.06 7.74 -12.99 -0.10 15.96 15 10 O -0.58 -19.03 14.73 5.20 0.08 -18.96 15 11 N -0.76 -17.45 5.18 -53.60 -0.28 -17.72 15 12 C 0.18 3.62 2.95 -66.27 -0.20 3.43 15 13 H 0.08 1.79 7.67 -51.93 -0.40 1.39 15 14 C -0.13 -2.38 6.57 -24.74 -0.16 -2.54 15 15 C -0.09 -1.34 6.64 -25.07 -0.17 -1.51 15 16 C -0.17 -2.30 7.04 -88.19 -0.62 -2.92 15 17 H 0.11 1.24 8.14 -51.93 -0.42 0.82 15 18 C -0.16 -2.09 10.21 -25.42 -0.26 -2.35 15 19 C -0.16 -2.56 6.44 -89.50 -0.58 -3.14 15 20 H 0.11 1.59 8.02 -51.93 -0.42 1.17 15 21 H 0.27 7.33 8.29 -40.82 -0.34 7.00 15 22 H 0.38 7.72 8.50 -40.82 -0.35 7.37 15 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 27 H 0.09 1.26 8.14 -51.93 -0.42 0.83 15 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 15 LS Contribution 242.57 15.07 3.66 3.66 Total: -1.00 -33.44 242.57 -7.10 -40.54 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.67 Total: 6.55 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.52 Total: -6.69 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.38 Total: -40.43 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.08 Total: -18.96 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -33.44 -7.10 -40.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306213562.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.523 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds