Wall clock time and date at job start Mon Mar 30 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 119.99859 * 2 1 4 4 H 1.48497 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47138 * 299.99952 * 3 2 1 6 6 H 1.48498 * 109.47350 * 59.99898 * 3 2 1 7 7 C 1.40046 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.46380 * 119.99818 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00113 * 0.02562 * 9 7 2 11 11 N 1.34771 * 119.99762 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00017 * 180.02562 * 11 9 7 13 13 H 1.08996 * 110.53623 * 36.15782 * 12 11 9 14 14 C 1.54897 * 110.48588 * 273.54701 * 12 11 9 15 15 C 1.54882 * 102.74839 * 203.37647 * 14 12 11 16 16 C 1.54268 * 104.19625 * 37.94120 * 15 14 12 17 17 H 1.09005 * 117.75680 * 116.74935 * 16 15 14 18 18 C 1.55462 * 118.30387 * 272.80102 * 16 15 14 19 19 C 1.53005 * 59.84054 * 93.29769 * 18 16 15 20 20 H 1.08993 * 119.30394 * 111.70773 * 19 18 16 21 21 H 0.97001 * 120.00427 * 359.97438 * 1 2 3 22 22 H 0.97001 * 120.00577 * 0.02562 * 11 9 7 23 23 H 1.08994 * 110.75328 * 321.69480 * 14 12 11 24 24 H 1.09004 * 110.75215 * 85.06188 * 14 12 11 25 25 H 1.08997 * 110.48961 * 156.62169 * 15 14 12 26 26 H 1.09002 * 110.48969 * 279.26637 * 15 14 12 27 27 H 1.08997 * 118.06552 * 346.16476 * 18 16 15 28 28 H 1.09004 * 117.16473 * 200.82397 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6476 -0.0005 12 6 1.2166 -4.9164 -0.0011 13 1 0.3120 -4.8354 -0.6037 14 6 0.8673 -5.3414 1.4469 15 6 0.6850 -6.8741 1.3187 16 6 1.7754 -7.3021 0.3149 17 1 2.5557 -7.9756 0.6695 18 6 1.4408 -7.2526 -1.2025 19 6 2.1135 -6.0574 -0.5243 20 1 3.1434 -5.8089 -0.7801 21 1 -0.4851 0.8400 0.0004 22 1 2.9191 -3.6477 -0.0002 23 1 1.6857 -5.1051 2.1268 24 1 -0.0582 -4.8684 1.7756 25 1 0.8421 -7.3588 2.2823 26 1 -0.3055 -7.1093 0.9293 27 1 0.3963 -7.1428 -1.4939 28 1 2.0523 -7.8629 -1.8671 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306213562.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:49 Heat of formation + Delta-G solvation = -45.692554 kcal Electronic energy + Delta-G solvation = -12118.320778 eV Core-core repulsion = 9940.468389 eV Total energy + Delta-G solvation = -2177.852389 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.63765 -38.74048 -34.89482 -34.16806 -31.97936 -29.13713 -27.12902 -23.76807 -22.01971 -21.23511 -20.74363 -19.02970 -17.49522 -17.24948 -16.10138 -15.50206 -15.29952 -14.79957 -14.34419 -13.94821 -13.68053 -13.23738 -12.85006 -12.65988 -12.57700 -12.21642 -12.12777 -11.96783 -11.68309 -11.04063 -10.94969 -10.55449 -9.85649 -9.43242 -8.29770 -6.86698 1.39521 1.39850 1.58027 2.24338 2.46464 2.69290 3.08116 3.54173 3.61940 3.88808 4.10317 4.24466 4.32735 4.53450 4.56114 4.66897 4.77038 4.92079 5.03714 5.19869 5.24983 5.26936 5.31361 5.45264 5.88299 6.24369 6.33384 6.85995 7.56987 8.49895 8.67561 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.077869 B = 0.008351 C = 0.008087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.491213 B = 3352.266161 C = 3461.667187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.538 3.462 10 O -0.633 6.633 11 N -0.748 5.748 12 C 0.172 3.828 13 H 0.038 0.962 14 C -0.131 4.131 15 C -0.088 4.088 16 C -0.149 4.149 17 H 0.138 0.862 18 C -0.146 4.146 19 C -0.183 4.183 20 H 0.120 0.880 21 H 0.274 0.726 22 H 0.394 0.606 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.846 -10.746 0.551 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.612 4.612 8 H 0.105 0.895 9 C 0.342 3.658 10 O -0.520 6.520 11 N -0.400 5.400 12 C 0.066 3.934 13 H 0.056 0.944 14 C -0.170 4.170 15 C -0.126 4.126 16 C -0.167 4.167 17 H 0.156 0.844 18 C -0.183 4.183 19 C -0.201 4.201 20 H 0.138 0.862 21 H 0.084 0.916 22 H 0.228 0.772 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.807 -10.668 0.554 12.158 hybrid contribution 0.301 0.980 -0.028 1.025 sum 6.109 -9.688 0.526 11.465 Atomic orbital electron populations 1.70204 1.09610 1.28873 1.36655 1.27005 0.95529 1.05044 0.91145 0.84939 0.79325 0.75246 0.78546 1.16937 1.19311 1.19301 1.21485 0.94738 0.90165 1.54779 0.89469 1.18635 0.86875 0.84416 0.75907 1.90541 1.16250 1.87980 1.57260 1.45795 1.09047 1.04514 1.80691 1.21063 0.93809 0.83260 0.95287 0.94371 1.23000 1.00237 0.96710 0.97033 1.21884 0.98167 0.92903 0.99638 1.23768 1.01542 1.00341 0.91003 0.84379 1.23549 1.01409 0.98873 0.94436 1.23355 1.00309 0.89447 1.07002 0.86192 0.91589 0.77237 0.91371 0.94597 0.88899 0.91598 0.89794 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.66 11.83 21.84 0.26 -51.40 15 2 C 0.03 1.57 5.50 85.30 0.47 2.04 15 3 Si 1.00 41.68 29.56 68.60 2.03 43.71 15 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 15 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 7 C -0.58 -33.50 9.54 24.83 0.24 -33.26 15 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 15 9 C 0.54 32.34 7.74 86.36 0.67 33.01 15 10 O -0.63 -43.89 14.73 -4.30 -0.06 -43.96 15 11 N -0.75 -35.25 5.18 -441.71 -2.29 -37.54 15 12 C 0.17 7.05 2.95 46.07 0.14 7.18 15 13 H 0.04 1.85 7.67 -2.39 -0.02 1.83 15 14 C -0.13 -4.85 6.57 31.89 0.21 -4.64 15 15 C -0.09 -2.35 6.64 31.67 0.21 -2.14 15 16 C -0.15 -3.48 7.04 -9.22 -0.06 -3.55 15 17 H 0.14 2.47 8.14 -2.38 -0.02 2.46 15 18 C -0.15 -3.47 10.21 31.44 0.32 -3.15 15 19 C -0.18 -5.40 6.44 -10.07 -0.06 -5.46 15 20 H 0.12 3.25 8.02 -2.39 -0.02 3.23 15 21 H 0.27 15.49 8.29 -92.71 -0.77 14.72 15 22 H 0.39 16.02 8.50 -92.71 -0.79 15.23 15 23 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 24 H 0.04 1.54 8.14 -2.38 -0.02 1.52 15 25 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 28 H 0.12 2.26 8.14 -2.38 -0.02 2.24 15 Total: -1.00 -76.32 242.57 2.43 -73.89 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.37 Total: 25.26 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 2.12 Total: -9.98 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -2.03 Total: -88.93 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.06 Total: -43.96 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -76.32 2.43 -73.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306213562.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.201 kcal (2) G-P(sol) polarization free energy of solvation -76.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds