Wall clock time and date at job start Mon Mar 30 2020 02:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35247 * 126.06846 * 2 1 4 4 N 1.34957 * 107.86424 * 180.02562 * 3 2 1 5 5 H 0.96999 * 125.97606 * 180.02562 * 4 3 2 6 6 N 1.40078 * 108.05470 * 359.97438 * 4 3 2 7 7 C 1.31226 * 108.16708 * 359.72018 * 6 4 3 8 8 N 1.39988 * 125.97150 * 180.29525 * 7 6 4 9 9 C 1.46493 * 120.00172 * 0.16686 * 8 7 6 10 10 H 1.09003 * 109.47461 * 325.00147 * 9 8 7 11 11 C 1.52999 * 109.47305 * 85.00158 * 9 8 7 12 12 C 1.50701 * 109.47327 * 205.00433 * 9 8 7 13 13 H 1.08003 * 119.99757 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00380 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99808 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00493 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.46965 * 89.99527 * 16 14 12 18 18 H 1.48495 * 109.47485 * 209.99932 * 16 14 12 19 19 H 1.48507 * 109.47003 * 330.00336 * 16 14 12 20 20 H 1.09002 * 109.47152 * 90.02478 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.02578 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.02559 * 1 2 3 23 23 H 1.08001 * 126.06752 * 0.02562 * 3 2 1 24 24 H 0.96995 * 119.99251 * 180.17077 * 8 7 6 25 25 H 1.08997 * 109.47408 * 300.00070 * 11 9 8 26 26 H 1.09001 * 109.46997 * 60.00154 * 11 9 8 27 27 H 1.09005 * 109.47406 * 179.97438 * 11 9 8 28 28 H 0.97007 * 119.99808 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 7 3.5853 0.6716 -0.0006 5 1 4.3718 1.2393 -0.0004 6 7 3.5817 -0.7292 -0.0003 7 6 2.3338 -1.1351 0.0064 8 7 1.9023 -2.4668 0.0148 9 6 2.8834 -3.5546 0.0203 10 1 3.7513 -3.2642 -0.5718 11 6 3.3198 -3.8407 1.4585 12 6 2.2630 -4.7936 -0.5723 13 1 1.2400 -4.7728 -0.9180 14 6 3.0010 -5.9539 -0.6722 15 7 4.2465 -5.9793 -0.2508 16 14 2.2318 -7.4899 -1.4060 17 1 2.4661 -7.5086 -2.8723 18 1 2.8465 -8.6936 -0.7910 19 1 0.7711 -7.4883 -1.1383 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 0.8902 0.5134 22 1 -0.3633 -0.8898 0.5142 23 1 1.9720 2.1212 0.0004 24 1 0.9537 -2.6691 0.0169 25 1 3.7685 -2.9446 1.8871 26 1 2.4519 -4.1312 2.0506 27 1 4.0495 -4.6504 1.4627 28 1 4.7659 -6.7956 -0.3214 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306271800.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:39 Heat of formation + Delta-G solvation = 69.150141 kcal Electronic energy + Delta-G solvation = -12080.602896 eV Core-core repulsion = 9940.023211 eV Total energy + Delta-G solvation = -2140.579685 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.40966 -35.52086 -32.74901 -31.63022 -29.85115 -27.66272 -25.84072 -25.09659 -21.53903 -19.65551 -19.19956 -17.25697 -16.36888 -14.90780 -14.54963 -14.29341 -13.80988 -12.89270 -12.51825 -12.38542 -12.29408 -11.78962 -11.56038 -11.08007 -10.93731 -10.68046 -10.23878 -10.11206 -9.55605 -9.50751 -8.87568 -8.39087 -7.97368 -6.65295 -6.02072 -4.09660 2.53096 3.30868 3.36908 3.39499 3.48698 3.75250 4.37646 4.71631 5.26457 5.30399 5.60103 5.78853 6.05218 6.18763 6.22117 6.60254 6.86880 7.01576 7.19138 7.32433 7.66871 7.82645 7.84831 8.02404 8.19194 8.32339 8.71037 8.90964 9.21603 9.57289 11.03942 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.057586 B = 0.009154 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.112715 B = 3058.107939 C = 3334.730929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.288 4.288 3 C 0.065 3.935 4 N -0.493 5.493 5 H 0.432 0.568 6 N -0.352 5.352 7 C 0.356 3.644 8 N -0.703 5.703 9 C 0.279 3.721 10 H 0.040 0.960 11 C -0.147 4.147 12 C -0.528 4.528 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.164 0.836 24 H 0.396 0.604 25 H 0.012 0.988 26 H 0.023 0.977 27 H 0.086 0.914 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 10.956 0.842 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.304 4.304 3 C -0.083 4.083 4 N -0.200 5.200 5 H 0.274 0.726 6 N -0.188 5.188 7 C 0.095 3.905 8 N -0.341 5.341 9 C 0.176 3.824 10 H 0.058 0.942 11 C -0.206 4.206 12 C -0.566 4.566 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.524 5.524 16 Si 0.728 3.272 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.181 0.819 24 H 0.230 0.770 25 H 0.031 0.969 26 H 0.043 0.957 27 H 0.105 0.895 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.273 10.347 0.853 10.886 hybrid contribution -1.107 -0.308 -0.359 1.204 sum -4.380 10.040 0.495 10.965 Atomic orbital electron populations 1.19896 0.90140 1.01324 1.00784 1.19784 0.96516 0.91318 1.22753 1.22019 0.85253 0.98808 1.02219 1.45795 1.06007 1.05747 1.62403 0.72594 1.77653 1.17528 0.87166 1.36462 1.19440 0.90361 0.87117 0.93589 1.44669 1.08999 0.99459 1.81022 1.18577 0.87736 0.82960 0.93092 0.94168 1.22119 1.00481 0.99916 0.98113 1.21274 0.99199 0.95223 1.40940 0.92210 1.24875 0.94846 0.98750 0.95323 1.69915 1.08177 1.28002 1.46351 0.86475 0.79319 0.82243 0.79194 1.20658 1.21177 1.19878 0.92863 0.92821 0.92456 0.81921 0.76962 0.96914 0.95734 0.89536 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.22 36.01 0.37 -0.50 15 2 C -0.29 -4.93 6.12 -104.86 -0.64 -5.57 15 3 C 0.07 0.93 11.89 -17.24 -0.21 0.73 15 4 N -0.49 -7.91 7.35 30.43 0.22 -7.69 15 5 H 0.43 5.22 8.96 -182.62 -1.64 3.58 15 6 N -0.35 -7.69 12.16 31.41 0.38 -7.31 15 7 C 0.36 7.62 7.85 -154.55 -1.21 6.41 15 8 N -0.70 -16.07 5.28 -54.70 -0.29 -16.36 15 9 C 0.28 7.42 2.73 -69.09 -0.19 7.23 15 10 H 0.04 1.21 7.83 -51.93 -0.41 0.81 15 11 C -0.15 -3.84 9.28 37.16 0.34 -3.49 15 12 C -0.53 -14.64 8.73 -34.44 -0.30 -14.94 15 13 H 0.06 1.60 7.74 -52.48 -0.41 1.20 15 14 C 0.06 1.79 5.30 -17.82 -0.09 1.70 15 15 N -0.89 -25.68 11.32 55.43 0.63 -25.05 15 16 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 15 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 20 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 15 22 H 0.06 0.79 7.68 -51.93 -0.40 0.39 15 23 H 0.16 1.55 8.06 -52.49 -0.42 1.13 15 24 H 0.40 8.26 8.05 -40.82 -0.33 7.93 15 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 15 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 27 H 0.09 2.42 6.07 -51.93 -0.32 2.11 15 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 LS Contribution 244.35 15.07 3.68 3.68 Total: -1.00 -31.78 244.35 -7.07 -38.84 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.74 Total: 6.04 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.93 Total: -8.43 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.94 Total: -56.41 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.78 -7.07 -38.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306271800.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.992 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds