Wall clock time and date at job start Mon Mar 30 2020 01:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48506 * 109.46670 * 240.00034 * 3 2 1 5 5 H 1.48495 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00019 * 3 2 1 7 7 C 1.40047 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99852 * 179.72466 * 7 2 1 9 9 C 1.46376 * 120.00289 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99603 * 359.71845 * 9 7 2 11 11 N 1.34777 * 120.00069 * 179.72718 * 9 7 2 12 12 C 1.46496 * 119.99614 * 179.97438 * 11 9 7 13 13 H 1.09001 * 115.52858 * 9.41114 * 12 11 9 14 14 C 1.53007 * 117.46034 * 154.91176 * 12 11 9 15 15 H 1.08997 * 119.29655 * 356.28549 * 14 12 11 16 16 C 1.54260 * 118.19903 * 202.14547 * 14 12 11 17 17 C 1.54887 * 104.19778 * 272.21271 * 16 14 12 18 18 C 1.54882 * 102.74984 * 37.94237 * 17 16 14 19 19 C 1.52997 * 117.45759 * 223.91595 * 12 11 9 20 20 H 1.08996 * 119.30253 * 3.70519 * 19 12 11 21 21 H 0.97000 * 119.99487 * 0.02562 * 1 2 3 22 22 H 0.96996 * 119.99887 * 359.97438 * 11 9 7 23 23 H 1.09009 * 110.48946 * 30.89215 * 16 14 12 24 24 H 1.09004 * 110.48705 * 153.39494 * 16 14 12 25 25 H 1.08998 * 110.75471 * 156.26104 * 17 16 14 26 26 H 1.08999 * 110.75601 * 279.44176 * 17 16 14 27 27 H 1.09000 * 110.48895 * 80.73442 * 18 17 16 28 28 H 1.09001 * 110.48890 * 203.24749 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 -0.0040 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0053 11 7 1.9490 -3.6477 -0.0045 12 6 1.2164 -4.9164 -0.0039 13 1 0.1406 -4.8376 -0.1602 14 6 1.9261 -6.1411 -0.5849 15 1 2.9138 -6.0237 -1.0307 16 6 1.0609 -7.3202 -1.0758 17 6 0.8603 -8.1955 0.1862 18 6 0.6973 -7.1424 1.3102 19 6 1.7145 -6.0181 0.9336 20 1 2.5464 -5.8103 1.6064 21 1 -0.4849 0.8401 -0.0004 22 1 2.9189 -3.6477 -0.0085 23 1 0.1012 -6.9606 -1.4471 24 1 1.5835 -7.8798 -1.8516 25 1 -0.0386 -8.8051 0.0946 26 1 1.7340 -8.8225 0.3642 27 1 -0.3211 -6.7540 1.3243 28 1 0.9533 -7.5743 2.2777 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306978367.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:30 Heat of formation + Delta-G solvation = -25.946848 kcal Electronic energy + Delta-G solvation = -11934.688485 eV Core-core repulsion = 9757.692334 eV Total energy + Delta-G solvation = -2176.996151 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.16817 -36.75166 -33.03977 -32.25961 -29.77059 -27.84836 -26.18998 -21.97838 -20.23861 -19.61050 -19.29600 -17.16107 -15.85224 -15.36235 -14.59613 -13.86479 -13.80972 -13.00076 -12.54208 -12.43881 -12.04875 -11.35000 -11.12204 -10.96045 -10.92887 -10.90214 -10.67662 -10.47437 -10.26846 -9.96411 -9.23734 -8.84459 -7.65043 -7.36422 -6.20403 -4.66542 3.15593 3.20297 3.22345 4.07236 4.12421 4.48726 4.60254 5.08112 5.13618 5.23303 5.52758 5.59460 5.73209 5.75043 5.89986 5.90492 6.02638 6.06811 6.20843 6.27419 6.51421 6.59907 6.73625 7.41684 7.88889 8.08465 8.31237 9.00146 9.49559 10.57783 10.75575 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.090223 B = 0.007549 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.268783 B = 3708.303140 C = 3796.552904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.578 6.578 11 N -0.736 5.736 12 C 0.142 3.858 13 H 0.123 0.877 14 C -0.193 4.193 15 H 0.101 0.899 16 C -0.091 4.091 17 C -0.122 4.122 18 C -0.091 4.091 19 C -0.192 4.192 20 H 0.105 0.895 21 H 0.269 0.731 22 H 0.382 0.618 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 -10.268 0.142 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.360 3.640 10 O -0.461 6.461 11 N -0.386 5.386 12 C 0.033 3.967 13 H 0.141 0.859 14 C -0.213 4.213 15 H 0.119 0.881 16 C -0.129 4.129 17 C -0.160 4.160 18 C -0.129 4.129 19 C -0.213 4.213 20 H 0.123 0.877 21 H 0.080 0.920 22 H 0.213 0.787 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.953 -10.104 0.138 10.528 hybrid contribution 1.166 0.720 0.026 1.371 sum 4.119 -9.384 0.164 10.250 Atomic orbital electron populations 1.70013 1.07077 1.27464 1.34973 1.25710 0.94643 1.00311 0.92586 0.86401 0.79792 0.80903 0.79455 1.19267 1.20513 1.19258 1.20836 0.93588 0.89267 1.54464 0.91391 1.18262 0.87277 0.82216 0.76205 1.90593 1.14047 1.86637 1.54797 1.45677 1.08280 1.03911 1.80780 1.21405 0.97125 0.80546 0.97591 0.85909 1.23708 1.01451 0.99550 0.96570 0.88071 1.21885 0.99380 0.94626 0.96984 1.22619 1.00921 0.97384 0.95039 1.22221 0.98703 0.94177 0.97814 1.24242 1.02539 1.01874 0.92605 0.87723 0.91974 0.78664 0.91458 0.91814 0.91784 0.91776 0.91359 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.15 11.83 55.55 0.66 -22.49 15 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 15 3 Si 0.91 20.21 29.56 -169.99 -5.02 15.19 15 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 15 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 7 C -0.54 -15.56 9.54 -35.63 -0.34 -15.90 15 8 H 0.07 1.77 7.85 -52.48 -0.41 1.36 15 9 C 0.56 16.14 7.75 -12.99 -0.10 16.04 15 10 O -0.58 -19.00 14.58 5.20 0.08 -18.93 15 11 N -0.74 -17.10 5.56 -55.21 -0.31 -17.41 15 12 C 0.14 2.89 5.95 -67.93 -0.40 2.49 15 13 H 0.12 2.80 7.40 -51.93 -0.38 2.42 15 14 C -0.19 -3.09 6.81 -89.54 -0.61 -3.70 15 15 H 0.10 1.55 8.14 -51.93 -0.42 1.13 15 16 C -0.09 -1.23 6.62 -25.08 -0.17 -1.40 15 17 C -0.12 -1.47 6.91 -24.74 -0.17 -1.64 15 18 C -0.09 -1.27 6.66 -24.01 -0.16 -1.43 15 19 C -0.19 -3.17 7.03 -88.48 -0.62 -3.79 15 20 H 0.10 1.69 8.14 -51.93 -0.42 1.27 15 21 H 0.27 7.37 8.29 -40.82 -0.34 7.03 15 22 H 0.38 7.82 8.81 -40.82 -0.36 7.46 15 23 H 0.07 0.95 8.14 -51.92 -0.42 0.52 15 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 LS Contribution 243.09 15.07 3.66 3.66 Total: -1.00 -33.10 243.09 -7.28 -40.38 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -3.67 Total: 6.57 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.67 Total: -6.98 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.35 Total: -39.90 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.08 Total: -18.93 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -33.10 -7.28 -40.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306978367.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.433 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds