Wall clock time and date at job start Mon Mar 30 2020 01:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.51321 * 121.02243 * 2 1 4 4 C 1.53235 * 108.64810 * 127.40752 * 3 2 1 5 5 C 1.53100 * 109.43513 * 56.17674 * 4 3 2 6 6 N 1.46878 * 109.26683 * 301.63327 * 5 4 3 7 7 C 1.34777 * 120.70842 * 237.06898 * 6 5 4 8 8 O 1.21688 * 120.00593 * 355.42882 * 7 6 5 9 9 C 1.46380 * 119.99400 * 175.43023 * 7 6 5 10 10 H 1.07996 * 120.00272 * 6.20786 * 9 7 6 11 11 C 1.40047 * 119.99780 * 186.20029 * 9 7 6 12 12 N 1.30679 * 120.00265 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00073 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47224 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47021 * 119.99998 * 13 11 9 16 16 H 1.48503 * 109.47160 * 240.00012 * 13 11 9 17 17 C 1.47201 * 118.57310 * 57.08701 * 6 5 4 18 18 H 1.07996 * 120.00537 * 180.02562 * 1 2 3 19 19 H 1.08010 * 119.99786 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.60951 * 7.66024 * 3 2 1 21 21 H 1.09005 * 109.60850 * 247.15093 * 3 2 1 22 22 H 1.09002 * 109.47806 * 296.18222 * 4 3 2 23 23 H 1.08997 * 109.47663 * 176.16534 * 4 3 2 24 24 H 1.09007 * 109.50510 * 61.56311 * 5 4 3 25 25 H 1.08995 * 109.51060 * 181.64958 * 5 4 3 26 26 H 0.97000 * 120.00351 * 180.02562 * 12 11 9 27 27 H 1.09004 * 109.82474 * 71.04003 * 17 6 5 28 28 H 1.08998 * 109.82664 * 191.90950 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0898 1.2968 0.0000 4 6 3.0982 1.2621 1.1533 5 6 3.9912 0.0266 1.0122 6 7 3.1532 -1.1797 1.0118 7 6 3.3531 -2.1570 1.9181 8 8 4.2870 -2.0847 2.6949 9 6 2.4468 -3.3053 1.9679 10 1 1.6796 -3.4208 1.2167 11 6 2.5746 -4.2544 2.9898 12 7 3.5027 -4.1146 3.8991 13 14 1.4185 -5.7203 3.0531 14 1 0.4647 -5.6479 1.9172 15 1 2.2057 -6.9760 2.9584 16 1 0.6665 -5.7028 4.3335 17 6 2.0906 -1.2983 0.0000 18 1 -0.5401 -0.9352 0.0004 19 1 -0.5400 0.9354 -0.0004 20 1 1.4064 2.1347 0.1369 21 1 2.6201 1.4048 -0.9463 22 1 2.5637 1.2179 2.1022 23 1 3.7141 2.1609 1.1247 24 1 4.5468 0.0840 0.0761 25 1 4.6897 -0.0151 1.8479 26 1 3.5915 -4.7721 4.6067 27 1 2.5326 -1.4641 -0.9825 28 1 1.4303 -2.1279 0.2529 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307430988.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:49 Heat of formation + Delta-G solvation = -23.656948 kcal Electronic energy + Delta-G solvation = -12401.268148 eV Core-core repulsion = 10224.371294 eV Total energy + Delta-G solvation = -2176.896854 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.49255 -35.93497 -32.80429 -32.10873 -31.61103 -26.72542 -25.69096 -24.43655 -21.65626 -19.10519 -18.01906 -16.55733 -15.65081 -14.60999 -14.34764 -14.25587 -13.74016 -13.40056 -12.79030 -12.40751 -12.11593 -11.72387 -11.39954 -11.08277 -11.00833 -10.64360 -10.44739 -10.32470 -10.14929 -9.87848 -8.86368 -8.69740 -7.57310 -7.20459 -6.19841 -4.64221 2.62383 3.12770 3.20874 3.25037 4.09425 4.55975 4.64295 5.10368 5.28029 5.45737 5.56893 5.76469 5.89110 6.04958 6.12999 6.14887 6.21096 6.36892 6.43193 6.61275 6.76624 6.97801 7.22167 7.46049 7.62965 8.14191 8.36901 9.02378 9.43681 10.57744 10.76251 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.044827 B = 0.012106 C = 0.010037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.477815 B = 2312.426188 C = 2789.123895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.130 4.130 5 C 0.118 3.882 6 N -0.641 5.641 7 C 0.560 3.440 8 O -0.578 6.578 9 C -0.544 4.544 10 H 0.073 0.927 11 C 0.087 3.913 12 N -0.769 5.769 13 Si 0.906 3.094 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.154 3.846 18 H 0.098 0.902 19 H 0.091 0.909 20 H 0.060 0.940 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.268 0.732 27 H 0.051 0.949 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 6.186 -6.962 10.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.168 4.168 5 C -0.006 4.006 6 N -0.379 5.379 7 C 0.366 3.634 8 O -0.461 6.461 9 C -0.581 4.581 10 H 0.091 0.909 11 C -0.132 4.132 12 N -0.398 5.398 13 Si 0.731 3.269 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.201 1.201 17 C 0.030 3.970 18 H 0.116 0.884 19 H 0.109 0.891 20 H 0.079 0.921 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.247 6.131 -6.339 9.789 hybrid contribution -0.714 -0.615 -0.027 0.943 sum -4.961 5.516 -6.367 9.776 Atomic orbital electron populations 1.23482 0.94868 1.01389 1.04152 1.22502 0.95360 0.96905 0.97750 1.20762 0.97671 0.94620 0.98901 1.21924 0.97856 0.98447 0.98603 1.21081 0.93436 0.84921 1.01142 1.48235 1.34860 1.19879 1.34897 1.18257 0.85148 0.81633 0.78355 1.90584 1.33651 1.79194 1.42635 1.21005 1.16990 1.07128 1.12933 0.90925 1.25734 0.94802 0.98229 0.94453 1.70026 1.27410 1.32281 1.10040 0.86337 0.80565 0.81195 0.78817 1.18724 1.20110 1.20141 1.20691 0.90086 0.94495 0.91756 0.88351 0.89070 0.92090 0.91396 0.91769 0.91875 0.94061 0.89755 0.92135 0.93120 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.01 14.00 29.02 0.41 -2.61 15 2 C -0.12 -2.08 5.49 -100.37 -0.55 -2.63 15 3 C -0.08 -1.22 6.01 -27.46 -0.16 -1.38 15 4 C -0.13 -2.15 6.09 -26.56 -0.16 -2.32 15 5 C 0.12 2.40 6.32 -3.78 -0.02 2.38 15 6 N -0.64 -15.15 2.98 -175.32 -0.52 -15.67 15 7 C 0.56 16.33 7.62 -12.98 -0.10 16.23 15 8 O -0.58 -19.05 14.47 5.20 0.08 -18.98 15 9 C -0.54 -15.47 8.85 -35.63 -0.32 -15.78 15 10 H 0.07 1.89 5.72 -52.49 -0.30 1.59 15 11 C 0.09 2.46 5.50 -17.36 -0.10 2.36 15 12 N -0.77 -23.25 11.85 55.55 0.66 -22.59 15 13 Si 0.91 20.19 29.56 -169.99 -5.02 15.17 15 14 H -0.26 -5.63 7.11 56.52 0.40 -5.22 15 15 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 17 C 0.15 3.01 6.40 -4.42 -0.03 2.99 15 18 H 0.10 1.43 7.97 -52.49 -0.42 1.01 15 19 H 0.09 1.18 7.92 -52.48 -0.42 0.77 15 20 H 0.06 0.79 7.89 -51.93 -0.41 0.38 15 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.08 1.91 7.00 -51.93 -0.36 1.55 15 26 H 0.27 7.32 8.29 -40.82 -0.34 6.98 15 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 28 H 0.10 2.01 5.23 -51.93 -0.27 1.73 15 LS Contribution 237.19 15.07 3.57 3.57 Total: -1.00 -33.52 237.19 -5.70 -39.22 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -3.43 Total: 0.04 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.03 Total: -0.76 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.14 Total: -38.26 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.08 Total: -18.98 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -33.52 -5.70 -39.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307430988.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.561 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds