Wall clock time and date at job start Mon Mar 30 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00012 * 2 1 4 4 H 1.48503 * 109.47591 * 269.99962 * 3 2 1 5 5 H 1.48504 * 109.47161 * 30.00037 * 3 2 1 6 6 H 1.48506 * 109.47325 * 150.00207 * 3 2 1 7 7 C 1.37883 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99477 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46758 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.46982 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00059 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47348 * 180.02562 * 12 11 10 14 14 C 1.39874 * 126.04031 * 270.00061 * 13 12 11 15 15 N 1.30836 * 108.20052 * 179.73886 * 14 13 12 16 16 N 1.40084 * 108.20904 * 0.40640 * 15 14 13 17 17 H 0.97001 * 126.04219 * 179.85882 * 16 15 14 18 18 C 1.34947 * 107.92164 * 359.58781 * 16 15 14 19 19 H 0.97002 * 120.00072 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46978 * 60.01177 * 9 7 2 21 21 H 1.08994 * 109.47742 * 300.00744 * 9 7 2 22 22 H 1.08998 * 109.47367 * 60.00765 * 10 9 7 23 23 H 1.08996 * 109.47485 * 300.00156 * 10 9 7 24 24 H 1.00905 * 111.00262 * 56.05301 * 11 10 9 25 25 H 1.09007 * 109.47163 * 60.00139 * 12 11 10 26 26 H 1.09002 * 109.47019 * 300.00251 * 12 11 10 27 27 H 1.08001 * 125.89534 * 0.02562 * 14 13 12 28 28 H 1.08006 * 126.12506 * 180.22115 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4353 -6.0759 -0.0006 13 6 1.6473 -7.3604 -0.0019 14 6 1.2158 -8.0623 1.1285 15 7 0.5602 -9.1208 0.7266 16 7 0.5617 -9.1310 -0.6742 17 1 0.1500 -9.8023 -1.2406 18 6 1.2322 -8.0387 -1.0967 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6246 -2.5571 0.8895 22 1 2.8719 -3.6044 0.8895 23 1 2.8720 -3.6043 -0.8905 24 1 0.8747 -4.9842 -0.7828 25 1 3.0627 -6.0349 0.8899 26 1 3.0640 -6.0348 -0.8901 27 1 1.3895 -7.7770 2.1555 28 1 1.4065 -7.7566 -2.1246 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308079242.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:14 Heat of formation + Delta-G solvation = 63.242841 kcal Electronic energy + Delta-G solvation = -11419.954480 eV Core-core repulsion = 9279.118634 eV Total energy + Delta-G solvation = -2140.835845 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.08248 -35.94016 -33.08520 -31.53810 -30.83530 -28.57673 -25.10139 -23.12507 -21.86150 -20.55991 -19.90385 -17.75976 -16.27388 -15.05394 -14.66057 -14.49442 -14.34526 -13.65350 -13.47727 -12.99642 -12.34366 -12.06867 -11.55179 -10.98737 -10.91901 -10.68916 -10.48578 -9.93813 -9.60761 -9.39021 -9.14336 -8.50366 -8.32347 -7.70167 -5.97006 -3.99505 1.91379 2.84187 2.92551 3.33675 3.39920 3.43415 4.47089 4.82289 4.91878 5.15886 5.33975 5.38870 5.58633 5.84224 5.98748 6.22092 6.39403 6.48144 6.67459 7.02807 7.25613 7.55099 7.67882 7.77725 7.87849 8.02352 8.13621 8.47114 9.08132 9.64086 11.14424 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.099173 B = 0.005537 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 282.268460 B = 5055.262876 C = 5129.632804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.688 5.688 12 C 0.133 3.867 13 C -0.223 4.223 14 C 0.070 3.930 15 N -0.305 5.305 16 N -0.483 5.483 17 H 0.436 0.564 18 C 0.056 3.944 19 H 0.260 0.740 20 H 0.013 0.987 21 H 0.025 0.975 22 H 0.059 0.941 23 H 0.014 0.986 24 H 0.335 0.665 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.184 0.816 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.240 -14.713 -2.701 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.319 5.319 12 C 0.003 3.997 13 C -0.235 4.235 14 C -0.117 4.117 15 N -0.127 5.127 16 N -0.191 5.191 17 H 0.279 0.721 18 C -0.092 4.092 19 H 0.070 0.930 20 H 0.031 0.969 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.032 0.968 24 H 0.152 0.848 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.200 0.800 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.384 -15.616 -1.631 15.881 hybrid contribution 0.950 1.423 -1.552 2.310 sum 3.333 -14.193 -3.183 14.923 Atomic orbital electron populations 1.69974 1.06039 1.26551 1.50717 1.25011 0.94838 0.99213 0.95362 0.86591 0.79855 0.83493 0.78021 1.20745 1.21219 1.19867 1.21195 0.92997 0.91047 1.50762 0.92733 1.19071 0.94059 0.90446 0.97712 1.22168 0.96967 0.88541 0.98625 1.60620 1.19744 1.01733 1.49811 1.20157 0.92757 0.86407 1.00405 1.20192 1.10474 1.01060 0.91747 1.23833 0.95689 0.91900 1.00247 1.77295 1.23759 1.22864 0.88785 1.46242 1.45378 1.21577 1.05859 0.72068 1.22401 0.97271 0.89421 1.00063 0.93016 0.96889 0.95624 0.92277 0.96751 0.84819 0.90650 0.95454 0.79956 0.80987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.44 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 15 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 15 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 15 10 C 0.07 1.37 5.62 -3.82 -0.02 1.35 15 11 N -0.69 -12.40 6.49 -115.06 -0.75 -13.14 15 12 C 0.13 1.92 6.17 -4.98 -0.03 1.89 15 13 C -0.22 -2.97 5.61 -105.05 -0.59 -3.56 15 14 C 0.07 0.95 11.96 -17.36 -0.21 0.75 15 15 N -0.30 -4.18 12.70 30.63 0.39 -3.79 15 16 N -0.48 -5.20 7.36 30.45 0.22 -4.97 15 17 H 0.44 3.14 8.96 -182.61 -1.64 1.50 15 18 C 0.06 0.62 11.90 -17.22 -0.21 0.42 15 19 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 20 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 15 21 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 24 H 0.33 5.89 8.72 -39.29 -0.34 5.54 15 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 15 27 H 0.18 2.13 8.06 -52.49 -0.42 1.71 15 28 H 0.17 1.36 8.06 -52.48 -0.42 0.93 15 LS Contribution 250.47 15.07 3.77 3.77 Total: -1.00 -32.54 250.47 -7.16 -39.70 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.90 Total: 0.44 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.61 Total: -12.31 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.60 Total: -48.35 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.54 -7.16 -39.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308079242.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.945 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds