Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47045 * 239.34860 * 3 2 1 5 5 C 1.36937 * 120.00711 * 263.72359 * 4 3 2 6 6 H 1.07995 * 120.00830 * 203.87364 * 5 4 3 7 7 C 1.38817 * 119.99491 * 23.87366 * 5 4 3 8 8 N 1.31621 * 120.00183 * 15.99539 * 7 5 4 9 9 Si 1.86804 * 119.99953 * 195.99598 * 7 5 4 10 10 H 1.48500 * 109.47007 * 89.99859 * 9 7 5 11 11 H 1.48496 * 109.46876 * 210.00189 * 9 7 5 12 12 H 1.48495 * 109.47065 * 329.99670 * 9 7 5 13 13 C 1.46504 * 120.00199 * 83.72673 * 4 3 2 14 14 H 1.09005 * 115.54337 * 25.66235 * 13 4 3 15 15 C 1.52998 * 117.50417 * 171.37826 * 13 4 3 16 16 C 1.53002 * 117.49923 * 240.00436 * 13 4 3 17 17 H 1.08999 * 117.49713 * 359.97438 * 16 13 4 18 18 C 1.53000 * 117.49978 * 144.99210 * 16 13 4 19 19 O 1.42900 * 109.46974 * 184.99504 * 18 16 13 20 20 H 4.40639 * 5.51402 * 180.02562 * 4 1 2 21 21 H 1.09001 * 109.47510 * 359.35067 * 3 2 1 22 22 H 1.09004 * 109.46922 * 119.35427 * 3 2 1 23 23 H 0.96998 * 119.99948 * 180.02562 * 8 7 5 24 24 H 1.09002 * 117.49677 * 214.97855 * 15 13 4 25 25 H 1.08996 * 117.49504 * 359.97438 * 15 13 4 26 26 H 1.08996 * 109.47142 * 304.99817 * 18 16 13 27 27 H 1.09001 * 109.46886 * 64.99839 * 18 16 13 28 28 H 0.96701 * 114.00017 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7050 1.1882 5 6 3.4839 2.0263 1.1056 6 1 4.1794 2.4464 1.8170 7 6 2.9445 2.8259 0.1072 8 7 1.8806 2.4237 -0.5553 9 14 3.7285 4.4728 -0.2960 10 1 4.7603 4.2856 -1.3475 11 1 2.6864 5.4103 -0.7863 12 1 4.3620 5.0317 0.9252 13 6 3.2478 -0.0042 2.4651 14 1 3.3822 -1.0835 2.3929 15 6 3.9492 0.7203 3.6157 16 6 2.4315 0.5287 3.6444 17 1 1.8102 1.4072 3.4703 18 6 1.8667 -0.4941 4.6322 19 8 1.0437 0.1736 5.5907 20 1 -1.0501 -0.0003 -0.0001 21 1 3.0099 -1.0268 0.0116 22 1 3.0091 0.5046 -0.8958 23 1 1.5040 2.9823 -1.2531 24 1 4.5456 0.1177 4.3007 25 1 4.3265 1.7245 3.4225 26 1 1.2714 -1.2304 4.0922 27 1 2.6875 -0.9958 5.1448 28 1 0.6508 -0.4149 6.2498 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388448968.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = 57.884956 kcal Electronic energy + Delta-G solvation = -12207.946918 eV Core-core repulsion = 10034.585986 eV Total energy + Delta-G solvation = -2173.360932 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.80565 -36.01146 -33.98040 -31.52737 -30.15264 -26.50644 -25.62440 -23.48873 -20.38497 -19.68453 -17.29970 -17.04853 -16.07822 -15.47310 -14.45635 -14.22663 -13.76246 -13.04430 -12.95788 -12.29150 -11.92558 -11.39904 -10.96482 -10.81553 -10.62165 -10.20106 -10.10817 -9.90000 -9.71861 -9.20915 -8.81958 -8.72973 -8.36543 -6.81434 -5.79839 -3.29266 3.35894 3.42919 3.44363 4.15859 4.40746 4.52142 4.56855 4.83506 5.37377 5.41761 5.60035 5.80927 5.85545 5.89664 6.04083 6.23907 6.35298 6.43052 6.69832 6.91348 7.17111 7.21643 7.45059 7.77705 7.99248 8.31038 9.09635 9.25327 9.73572 10.20863 11.21801 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.031482 B = 0.013039 C = 0.010861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.188450 B = 2146.891577 C = 2577.472053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.094 4.094 3 C 0.272 3.728 4 N -0.551 5.551 5 C -0.271 4.271 6 H 0.079 0.921 7 C 0.007 3.993 8 N -0.887 5.887 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.279 1.279 13 C 0.138 3.862 14 H 0.094 0.906 15 C -0.190 4.190 16 C -0.197 4.197 17 H 0.107 0.893 18 C 0.114 3.886 19 O -0.573 6.573 20 H 0.189 0.811 21 H 0.039 0.961 22 H 0.094 0.906 23 H 0.256 0.744 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 -6.412 5.338 8.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.097 4.097 3 C 0.147 3.853 4 N -0.266 5.266 5 C -0.400 4.400 6 H 0.097 0.903 7 C -0.193 4.193 8 N -0.528 5.528 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.028 3.972 14 H 0.112 0.888 15 C -0.229 4.229 16 C -0.220 4.220 17 H 0.125 0.875 18 C 0.037 3.963 19 O -0.377 6.377 20 H 0.206 0.794 21 H 0.056 0.944 22 H 0.112 0.888 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.470 -5.770 4.771 7.630 hybrid contribution -0.323 0.671 0.192 0.769 sum 1.147 -5.099 4.963 7.207 Atomic orbital electron populations 1.24128 0.95298 1.07940 1.04451 1.24117 0.95183 0.93834 0.96547 1.17726 0.83044 0.93200 0.91298 1.43708 1.72547 1.08526 1.01847 1.19239 1.20737 0.85462 1.14549 0.90330 1.25131 0.95760 0.98001 1.00397 1.70060 1.19719 1.37799 1.25264 0.86226 0.78398 0.83354 0.78395 1.21256 1.21765 1.20404 1.21231 0.99813 0.93882 0.82320 0.88824 1.23329 0.94150 1.03053 1.02323 1.22872 0.93514 1.03086 1.02480 0.87469 1.21733 0.91975 0.93783 0.88827 1.86581 1.67839 1.38843 1.44442 0.79386 0.94358 0.88846 0.93374 0.90284 0.88358 0.94088 0.94578 0.78722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.04 19.25 29.55 0.57 -6.47 15 2 C -0.09 -2.33 11.33 -37.12 -0.42 -2.75 15 3 C 0.27 6.47 5.45 -6.83 -0.04 6.43 15 4 N -0.55 -13.61 2.83 -168.97 -0.48 -14.08 15 5 C -0.27 -7.27 9.05 -15.06 -0.14 -7.41 15 6 H 0.08 2.08 5.93 -52.49 -0.31 1.77 15 7 C 0.01 0.20 4.95 -17.43 -0.09 0.11 15 8 N -0.89 -25.30 9.40 55.49 0.52 -24.78 15 9 Si 0.91 21.65 29.58 -169.99 -5.03 16.63 15 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 13 C 0.14 2.90 6.31 -67.93 -0.43 2.47 15 14 H 0.09 1.72 8.14 -51.93 -0.42 1.30 15 15 C -0.19 -3.69 9.48 -26.73 -0.25 -3.95 15 16 C -0.20 -4.10 5.80 -90.62 -0.53 -4.62 15 17 H 0.11 2.70 8.14 -51.93 -0.42 2.28 15 18 C 0.11 1.92 7.33 37.16 0.27 2.19 15 19 O -0.57 -9.59 13.66 -35.23 -0.48 -10.07 15 20 H 0.19 3.76 7.80 -54.08 -0.42 3.34 15 21 H 0.04 0.78 8.12 -51.93 -0.42 0.36 15 22 H 0.09 2.38 6.72 -51.93 -0.35 2.03 15 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 24 H 0.08 1.30 8.03 -51.93 -0.42 0.88 15 25 H 0.10 2.08 6.13 -51.93 -0.32 1.76 15 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 27 H 0.04 0.52 7.88 -51.93 -0.41 0.11 15 28 H 0.37 3.96 9.12 45.56 0.42 4.38 15 LS Contribution 248.21 15.07 3.74 3.74 Total: -1.00 -31.09 248.21 -5.41 -36.50 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -2.64 Total: 6.07 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.05 Total: -14.00 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.04 Total: -38.86 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.48 Total: -10.07 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.09 -5.41 -36.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388448968.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.381 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds