Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47045 * 239.34860 * 3 2 1 5 5 C 1.36937 * 120.00711 * 263.72359 * 4 3 2 6 6 H 1.07995 * 120.00830 * 203.87364 * 5 4 3 7 7 C 1.38817 * 119.99491 * 23.87366 * 5 4 3 8 8 N 1.31621 * 120.00183 * 15.99539 * 7 5 4 9 9 Si 1.86804 * 119.99953 * 195.99598 * 7 5 4 10 10 H 1.48500 * 109.47007 * 89.99859 * 9 7 5 11 11 H 1.48496 * 109.46876 * 210.00189 * 9 7 5 12 12 H 1.48495 * 109.47065 * 329.99670 * 9 7 5 13 13 C 1.46504 * 120.00199 * 83.72673 * 4 3 2 14 14 H 1.09005 * 115.54337 * 25.66235 * 13 4 3 15 15 C 1.52998 * 117.50417 * 171.37826 * 13 4 3 16 16 C 1.53002 * 117.49923 * 240.00436 * 13 4 3 17 17 H 1.08999 * 117.49713 * 359.97438 * 16 13 4 18 18 C 1.53000 * 117.49978 * 144.99210 * 16 13 4 19 19 O 1.42900 * 109.46974 * 184.99504 * 18 16 13 20 20 H 4.40639 * 5.51402 * 180.02562 * 4 1 2 21 21 H 1.09001 * 109.47510 * 359.35067 * 3 2 1 22 22 H 1.09004 * 109.46922 * 119.35427 * 3 2 1 23 23 H 0.96998 * 119.99948 * 180.02562 * 8 7 5 24 24 H 1.09002 * 117.49677 * 214.97855 * 15 13 4 25 25 H 1.08996 * 117.49504 * 359.97438 * 15 13 4 26 26 H 1.08996 * 109.47142 * 304.99817 * 18 16 13 27 27 H 1.09001 * 109.46886 * 64.99839 * 18 16 13 28 28 H 0.96701 * 114.00017 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7050 1.1882 5 6 3.4839 2.0263 1.1056 6 1 4.1794 2.4464 1.8170 7 6 2.9445 2.8259 0.1072 8 7 1.8806 2.4237 -0.5553 9 14 3.7285 4.4728 -0.2960 10 1 4.7603 4.2856 -1.3475 11 1 2.6864 5.4103 -0.7863 12 1 4.3620 5.0317 0.9252 13 6 3.2478 -0.0042 2.4651 14 1 3.3822 -1.0835 2.3929 15 6 3.9492 0.7203 3.6157 16 6 2.4315 0.5287 3.6444 17 1 1.8102 1.4072 3.4703 18 6 1.8667 -0.4941 4.6322 19 8 1.0437 0.1736 5.5907 20 1 -1.0501 -0.0003 -0.0001 21 1 3.0099 -1.0268 0.0116 22 1 3.0091 0.5046 -0.8958 23 1 1.5040 2.9823 -1.2531 24 1 4.5456 0.1177 4.3007 25 1 4.3265 1.7245 3.4225 26 1 1.2714 -1.2304 4.0922 27 1 2.6875 -0.9958 5.1448 28 1 0.6508 -0.4149 6.2498 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388448968.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = 36.245388 kcal Electronic energy + Delta-G solvation = -12208.885280 eV Core-core repulsion = 10034.585986 eV Total energy + Delta-G solvation = -2174.299294 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.41800 -37.47089 -35.69647 -33.47806 -32.04739 -28.17526 -27.33111 -25.31654 -22.06544 -21.31370 -19.16469 -18.42640 -17.96224 -17.20779 -16.18039 -15.68763 -15.46353 -14.87817 -14.64981 -13.96063 -13.51406 -13.28542 -12.79072 -12.71600 -12.33047 -12.06788 -11.69577 -11.64858 -11.30763 -10.87723 -10.68707 -10.46679 -10.25366 -8.73060 -7.85245 -5.35263 1.45375 1.46199 1.54424 2.30236 2.50592 2.60566 3.04880 3.34390 3.39313 3.82290 4.11532 4.16679 4.34604 4.47563 4.53293 4.72263 4.84553 4.94355 4.98842 5.25996 5.29213 5.52254 5.65848 5.69598 6.31268 7.01876 7.08797 7.38479 7.79854 8.21837 9.14122 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.031482 B = 0.013039 C = 0.010861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.188450 B = 2146.891577 C = 2577.472053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.125 4.125 3 C 0.272 3.728 4 N -0.569 5.569 5 C -0.273 4.273 6 H 0.077 0.923 7 C -0.045 4.045 8 N -0.913 5.913 9 Si 0.965 3.035 10 H -0.280 1.280 11 H -0.300 1.300 12 H -0.274 1.274 13 C 0.123 3.877 14 H 0.128 0.872 15 C -0.174 4.174 16 C -0.204 4.204 17 H 0.051 0.949 18 C 0.122 3.878 19 O -0.598 6.598 20 H 0.217 0.783 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.247 0.753 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 -7.617 6.600 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.128 4.128 3 C 0.147 3.853 4 N -0.285 5.285 5 C -0.403 4.403 6 H 0.094 0.906 7 C -0.242 4.242 8 N -0.556 5.556 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.199 1.199 13 C 0.014 3.986 14 H 0.145 0.855 15 C -0.212 4.212 16 C -0.226 4.226 17 H 0.070 0.930 18 C 0.045 3.955 19 O -0.406 6.406 20 H 0.234 0.766 21 H 0.092 0.908 22 H 0.086 0.914 23 H 0.057 0.943 24 H 0.139 0.861 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.092 -7.003 6.075 9.504 hybrid contribution -0.541 1.010 -0.117 1.152 sum 1.551 -5.993 5.958 8.592 Atomic orbital electron populations 1.24920 0.96360 1.07117 1.03490 1.24597 0.96104 0.94657 0.97470 1.17745 0.82778 0.94558 0.90222 1.43877 1.72840 1.08114 1.03652 1.19475 1.20093 0.86694 1.14004 0.90552 1.25799 0.96471 1.01024 1.00886 1.70228 1.21017 1.38604 1.25784 0.85303 0.77329 0.79787 0.78184 1.20603 1.22705 1.19905 1.21584 1.00553 0.95376 0.81073 0.85471 1.23351 0.93631 1.02270 1.01947 1.22747 0.93824 1.02181 1.03895 0.93023 1.21637 0.93190 0.92202 0.88482 1.86504 1.68234 1.40556 1.45299 0.76610 0.90813 0.91421 0.94315 0.86149 0.90756 0.93301 0.91043 0.75613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.96 19.25 74.32 1.43 -12.53 15 2 C -0.13 -6.21 11.33 31.13 0.35 -5.86 15 3 C 0.27 12.87 5.45 84.58 0.46 13.33 15 4 N -0.57 -27.94 2.83 -688.49 -1.95 -29.88 15 5 C -0.27 -14.78 9.05 84.03 0.76 -14.02 15 6 H 0.08 4.08 5.93 -2.91 -0.02 4.06 15 7 C -0.05 -2.50 4.95 84.86 0.42 -2.08 15 8 N -0.91 -53.19 9.40 21.65 0.20 -52.99 15 9 Si 0.97 45.30 29.58 68.60 2.03 47.33 15 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 11 H -0.30 -14.40 7.11 99.48 0.71 -13.69 15 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 13 C 0.12 4.94 6.31 44.99 0.28 5.22 15 14 H 0.13 4.21 8.14 -2.38 -0.02 4.19 15 15 C -0.17 -6.39 9.48 30.59 0.29 -6.10 15 16 C -0.20 -8.25 5.80 -10.79 -0.06 -8.31 15 17 H 0.05 2.67 8.14 -2.39 -0.02 2.65 15 18 C 0.12 3.73 7.33 71.98 0.53 4.25 15 19 O -0.60 -18.59 13.66 -148.98 -2.03 -20.62 15 20 H 0.22 8.33 7.80 -4.41 -0.03 8.30 15 21 H 0.07 2.89 8.12 -2.39 -0.02 2.87 15 22 H 0.07 3.52 6.72 -2.39 -0.02 3.51 15 23 H 0.25 14.26 8.31 -92.71 -0.77 13.48 15 24 H 0.12 3.42 8.03 -2.39 -0.02 3.40 15 25 H 0.07 3.09 6.13 -2.39 -0.01 3.08 15 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 27 H 0.07 1.70 7.88 -2.39 -0.02 1.68 15 28 H 0.39 7.28 9.12 -74.06 -0.68 6.61 15 Total: -1.00 -67.71 248.21 3.19 -64.51 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.48 Total: 17.75 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.46 Total: -26.09 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.74 Total: -82.87 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -2.03 Total: -20.62 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -67.71 3.19 -64.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388448968.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.758 kcal (2) G-P(sol) polarization free energy of solvation -67.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds