Wall clock time and date at job start Mon Mar 30 2020 02:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35255 * 126.06917 * 2 1 4 4 N 1.34957 * 107.86153 * 180.29165 * 3 2 1 5 5 C 1.46495 * 125.97350 * 179.73276 * 4 3 2 6 6 N 1.40079 * 108.05492 * 359.72422 * 4 3 2 7 7 C 1.31221 * 108.17019 * 0.02562 * 6 4 3 8 8 N 1.39983 * 125.97414 * 180.02562 * 7 6 4 9 9 C 1.46500 * 120.00100 * 0.02562 * 8 7 6 10 10 C 1.50706 * 109.46949 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47487 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47233 * 120.00158 * 14 12 10 17 17 H 1.48508 * 109.46883 * 239.99963 * 14 12 10 18 18 H 1.08993 * 109.47126 * 270.16343 * 1 2 3 19 19 H 1.08996 * 109.46869 * 30.16401 * 1 2 3 20 20 H 1.09003 * 109.47002 * 150.16091 * 1 2 3 21 21 H 1.07995 * 126.06623 * 0.02562 * 3 2 1 22 22 H 1.09000 * 109.46818 * 269.97345 * 5 4 3 23 23 H 1.09003 * 109.47352 * 29.96624 * 5 4 3 24 24 H 1.08997 * 109.47649 * 149.97432 * 5 4 3 25 25 H 0.97010 * 119.99990 * 180.02562 * 8 7 6 26 26 H 1.09000 * 109.47175 * 60.00286 * 9 8 7 27 27 H 1.09001 * 109.47297 * 299.99793 * 9 8 7 28 28 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3034 1.0933 0.0000 4 7 3.5854 0.6716 -0.0065 5 6 4.7732 1.5289 -0.0144 6 7 3.5817 -0.7292 -0.0043 7 6 2.3338 -1.1351 0.0028 8 7 1.9023 -2.4667 0.0076 9 6 2.8834 -3.5547 0.0054 10 6 2.1646 -4.8793 0.0109 11 1 1.0850 -4.9078 0.0201 12 6 2.8854 -6.0547 0.0095 13 7 4.2000 -6.0199 0.0038 14 14 1.9944 -7.6965 0.0156 15 1 0.5279 -7.4639 0.0222 16 1 2.3684 -8.4672 -1.1974 17 1 2.3789 -8.4638 1.2276 18 1 -0.3633 0.0029 1.0276 19 1 -0.3633 0.8885 -0.5164 20 1 -0.3633 -0.8915 -0.5113 21 1 1.9721 2.1212 0.0004 22 1 5.0624 1.7397 -1.0440 23 1 4.5497 2.4642 0.4988 24 1 5.5915 1.0209 0.4960 25 1 0.9536 -2.6691 0.0124 26 1 3.5124 -3.4786 0.8924 27 1 3.5042 -3.4824 -0.8876 28 1 4.7070 -6.8468 0.0032 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575480457.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:26 Heat of formation + Delta-G solvation = 74.149445 kcal Electronic energy + Delta-G solvation = -11796.915853 eV Core-core repulsion = 9656.552953 eV Total energy + Delta-G solvation = -2140.362899 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.45715 -35.12088 -32.99940 -31.82847 -30.59890 -27.60366 -26.46994 -24.22450 -22.39843 -19.89156 -19.31280 -16.84117 -16.00443 -15.03304 -14.76177 -14.44363 -13.80461 -13.22533 -12.99981 -12.63780 -12.47681 -12.02970 -11.85547 -11.64950 -11.54301 -10.89690 -10.76948 -10.16638 -9.56715 -9.47675 -9.22782 -8.46039 -7.91980 -6.59499 -6.06811 -4.11507 2.48869 3.07177 3.29640 3.36464 3.40508 3.74470 4.36547 4.67714 4.99127 5.21517 5.29467 5.39877 5.59655 5.64762 5.84135 6.05858 6.20191 6.29939 6.59922 6.94191 7.47360 7.62966 7.71002 7.77872 8.09000 8.18898 8.69187 8.88775 9.20969 9.54391 11.03874 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.055210 B = 0.008064 C = 0.007082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.028706 B = 3471.308640 C = 3952.585804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.287 4.287 3 C 0.064 3.936 4 N -0.392 5.392 5 C 0.115 3.885 6 N -0.353 5.353 7 C 0.351 3.649 8 N -0.707 5.707 9 C 0.265 3.735 10 C -0.535 4.535 11 H 0.062 0.938 12 C 0.062 3.938 13 N -0.889 5.889 14 Si 0.902 3.098 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 H 0.052 0.948 19 H 0.053 0.947 20 H 0.057 0.943 21 H 0.162 0.838 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.398 0.602 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 13.603 0.052 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.302 4.302 3 C -0.083 4.083 4 N -0.174 5.174 5 C -0.027 4.027 6 N -0.188 5.188 7 C 0.090 3.910 8 N -0.346 5.346 9 C 0.143 3.857 10 C -0.574 4.574 11 H 0.080 0.920 12 C -0.141 4.141 13 N -0.527 5.527 14 Si 0.729 3.271 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 H 0.071 0.929 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.180 0.820 22 H 0.082 0.918 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.233 0.767 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.119 13.120 0.044 13.290 hybrid contribution -1.423 -0.664 0.000 1.570 sum -3.542 12.456 0.044 12.950 Atomic orbital electron populations 1.19892 0.90032 1.01375 1.00752 1.19751 0.96441 0.91214 1.22808 1.21975 0.84640 0.98854 1.02813 1.47900 1.04550 1.04729 1.60214 1.21586 0.86363 0.92427 1.02365 1.77681 1.17594 0.87010 1.36484 1.19441 0.90435 0.87077 0.94019 1.44564 1.09196 0.99559 1.81301 1.18946 0.87496 0.82578 0.96663 1.21299 0.93366 0.90594 1.52137 0.91964 1.24934 0.94837 0.99359 0.94956 1.69991 1.05246 1.27755 1.49699 0.86389 0.79763 0.83291 0.77628 1.19645 1.20887 1.20897 0.92888 0.92797 0.92398 0.82047 0.91771 0.90477 0.89823 0.76686 0.96525 0.96519 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.21 36.01 0.37 -0.50 15 2 C -0.29 -5.08 6.12 -104.86 -0.64 -5.72 15 3 C 0.06 0.98 11.39 -17.24 -0.20 0.78 15 4 N -0.39 -6.78 4.01 -68.18 -0.27 -7.06 15 5 C 0.11 1.34 11.47 59.84 0.69 2.03 15 6 N -0.35 -8.03 12.24 31.41 0.38 -7.65 15 7 C 0.35 7.77 7.87 -154.55 -1.22 6.56 15 8 N -0.71 -16.69 5.76 -61.23 -0.35 -17.04 15 9 C 0.26 7.42 5.79 -5.19 -0.03 7.39 15 10 C -0.54 -15.31 9.28 -34.44 -0.32 -15.63 15 11 H 0.06 1.69 7.60 -52.49 -0.40 1.29 15 12 C 0.06 1.78 5.46 -17.82 -0.10 1.69 15 13 N -0.89 -27.01 13.29 55.43 0.74 -26.27 15 14 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 15 15 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 18 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 20 H 0.06 0.82 7.70 -51.93 -0.40 0.42 15 21 H 0.16 1.71 8.06 -52.49 -0.42 1.28 15 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.40 8.50 7.84 -40.82 -0.32 8.18 15 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 15 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 250.24 15.07 3.77 3.77 Total: -1.00 -33.81 250.24 -5.84 -39.65 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.64 Total: 1.42 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.45 Total: -3.42 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.49 Total: -58.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.81 -5.84 -39.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575480457.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.798 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds