Wall clock time and date at job start Mon Mar 30 2020 01:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00602 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72275 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72123 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72159 * 3 2 1 7 7 C 1.38956 * 119.99490 * 179.72143 * 2 1 3 8 8 H 1.08002 * 119.99776 * 0.27517 * 7 2 1 9 9 N 1.37097 * 119.99700 * 180.27578 * 7 2 1 10 10 C 1.34777 * 119.99758 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.02562 * 10 9 7 13 13 H 1.09010 * 110.67168 * 303.23886 * 12 10 9 14 14 C 1.54889 * 110.75409 * 66.67177 * 12 10 9 15 15 C 1.54270 * 104.19453 * 156.25816 * 14 12 10 16 16 H 1.09000 * 117.75594 * 116.74912 * 15 14 12 17 17 C 1.55457 * 118.30324 * 272.80266 * 15 14 12 18 18 C 1.53001 * 59.83999 * 93.29329 * 17 15 14 19 19 H 1.09005 * 119.30048 * 111.70693 * 18 17 15 20 20 C 1.54266 * 118.20317 * 265.84963 * 18 17 15 21 21 H 0.97004 * 119.99472 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00509 * 359.97438 * 9 7 2 23 23 H 1.08999 * 110.48597 * 274.94065 * 14 12 10 24 24 H 1.08997 * 110.48636 * 37.58350 * 14 12 10 25 25 H 1.08998 * 118.06310 * 346.16258 * 17 15 14 26 26 H 1.09006 * 117.18594 * 200.81784 * 17 15 14 27 27 H 1.09001 * 110.48316 * 330.32688 * 20 18 17 28 28 H 1.08992 * 110.60350 * 207.73199 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.5016 2.0428 -1.4001 5 1 1.4429 2.6543 0.6941 6 1 3.5428 1.4417 0.7059 7 6 2.0088 -1.2034 0.0059 8 1 1.4687 -2.1387 0.0059 9 7 3.3797 -1.2035 0.0116 10 6 4.0535 -2.3707 0.0178 11 8 3.4470 -3.4211 0.0178 12 6 5.5605 -2.3709 0.0246 13 1 5.9493 -1.8142 -0.8282 14 6 6.1034 -1.7938 1.3556 15 6 7.5170 -2.3986 1.4814 16 1 8.3648 -1.7136 1.4733 17 6 7.6658 -3.7899 2.1588 18 6 7.5207 -3.6864 0.6392 19 1 8.3675 -3.9454 0.0036 20 6 6.1093 -3.8193 0.0309 21 1 -0.4849 0.8401 -0.0004 22 1 3.8648 -0.3635 0.0112 23 1 6.1567 -0.7063 1.3062 24 1 5.4781 -2.1085 2.1910 25 1 6.8167 -4.1808 2.7193 26 1 8.6483 -4.0492 2.5534 27 1 5.4849 -4.4611 0.6525 28 1 6.1648 -4.2106 -0.9849 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575500741.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:09 Heat of formation + Delta-G solvation = -17.985505 kcal Electronic energy + Delta-G solvation = -12160.103874 eV Core-core repulsion = 9983.452953 eV Total energy + Delta-G solvation = -2176.650922 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.60961 -37.55965 -33.98814 -31.84380 -31.13870 -27.96907 -25.32846 -22.79165 -20.65290 -19.45417 -19.11676 -18.04125 -16.18205 -15.86322 -14.93234 -14.04380 -13.67804 -13.19763 -12.87006 -12.66076 -12.49709 -12.16146 -11.28653 -11.21075 -11.00892 -10.79649 -10.73699 -10.56106 -9.96037 -9.86705 -9.57305 -9.50715 -8.43702 -8.16846 -6.30426 -3.81449 3.04025 3.08071 3.15913 3.60799 3.85738 4.11285 4.47409 4.82665 4.93961 5.00630 5.24635 5.31302 5.44471 5.64556 5.69927 5.75746 5.91446 5.96755 6.08136 6.23746 6.29887 6.38995 6.47350 6.70736 7.58717 8.16546 8.60868 8.95913 9.44573 9.85178 10.82800 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.057898 B = 0.009811 C = 0.008843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.495404 B = 2853.348660 C = 3165.504028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.042 3.958 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.119 0.881 9 N -0.588 5.588 10 C 0.457 3.543 11 O -0.578 6.578 12 C -0.106 4.106 13 H 0.088 0.912 14 C -0.086 4.086 15 C -0.168 4.168 16 H 0.108 0.892 17 C -0.158 4.158 18 C -0.163 4.163 19 H 0.105 0.895 20 C -0.073 4.073 21 H 0.273 0.727 22 H 0.371 0.629 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.947 -0.539 1.901 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.226 5.226 10 C 0.243 3.757 11 O -0.461 6.461 12 C -0.128 4.128 13 H 0.106 0.894 14 C -0.124 4.124 15 C -0.186 4.186 16 H 0.126 0.874 17 C -0.195 4.195 18 C -0.181 4.181 19 H 0.123 0.877 20 C -0.111 4.111 21 H 0.084 0.916 22 H 0.204 0.796 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.302 -1.111 1.885 14.468 hybrid contribution 0.619 1.491 -0.055 1.616 sum 14.921 0.380 1.830 15.038 Atomic orbital electron populations 1.69626 1.05656 1.27488 1.49381 1.25042 0.95488 0.97972 0.97606 0.86689 0.79873 0.84044 0.78951 1.19584 1.20137 1.19392 1.19469 0.79416 0.96620 1.48023 0.86319 1.42248 1.07467 1.06286 1.66554 1.19688 0.88150 0.84337 0.83478 1.90544 1.69765 1.31146 1.54671 1.22355 0.94105 0.97789 0.98554 0.89382 1.21916 0.93559 0.99772 0.97123 1.23605 0.98463 0.89942 1.06597 0.87352 1.23432 1.02492 0.98816 0.94761 1.23301 0.99086 1.02690 0.93000 0.87662 1.21733 0.92448 0.95734 1.01213 0.91624 0.79614 0.91091 0.90800 0.88797 0.88805 0.89997 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.96 55.50 0.77 -25.22 15 2 C 0.04 1.16 5.50 -17.47 -0.10 1.07 15 3 Si 0.88 19.60 27.74 -169.99 -4.71 14.89 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.27 -5.48 6.52 56.52 0.37 -5.11 15 7 C -0.31 -8.82 10.16 -14.93 -0.15 -8.97 15 8 H 0.12 3.89 7.39 -52.49 -0.39 3.50 15 9 N -0.59 -14.35 5.09 -10.96 -0.06 -14.40 15 10 C 0.46 10.68 7.08 -10.98 -0.08 10.60 15 11 O -0.58 -15.88 15.30 5.55 0.08 -15.80 15 12 C -0.11 -1.85 3.29 -89.78 -0.30 -2.15 15 13 H 0.09 1.37 8.14 -51.92 -0.42 0.95 15 14 C -0.09 -1.31 6.08 -25.07 -0.15 -1.46 15 15 C -0.17 -2.13 7.04 -88.20 -0.62 -2.75 15 16 H 0.11 1.18 8.14 -51.93 -0.42 0.76 15 17 C -0.16 -1.89 10.21 -25.43 -0.26 -2.15 15 18 C -0.16 -2.10 6.85 -89.50 -0.61 -2.71 15 19 H 0.11 1.17 8.14 -51.93 -0.42 0.75 15 20 C -0.07 -1.18 5.70 -25.07 -0.14 -1.32 15 21 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 22 H 0.37 8.01 5.76 -40.82 -0.24 7.77 15 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.07 1.23 8.04 -51.93 -0.42 0.81 15 25 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.08 1.49 7.43 -51.93 -0.39 1.10 15 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 LS Contribution 238.65 15.07 3.60 3.60 Total: -1.00 -31.66 238.65 -6.28 -37.94 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -3.55 Total: 8.84 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.41 Total: -9.84 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.72 Total: -39.63 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.08 Total: -15.80 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.66 -6.28 -37.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575500741.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.952 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds