Wall clock time and date at job start Mon Mar 30 2020 02:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37098 * 119.99879 * 2 1 4 4 H 1.08003 * 119.99444 * 156.11368 * 3 2 1 5 5 C 1.38950 * 120.00317 * 336.11484 * 3 2 1 6 6 N 1.31415 * 119.99669 * 345.17408 * 5 3 2 7 7 Si 1.86797 * 119.99924 * 165.17545 * 5 3 2 8 8 H 1.48498 * 109.47130 * 59.99688 * 7 5 3 9 9 H 1.48498 * 109.46763 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46858 * 299.99995 * 7 5 3 11 11 C 1.34779 * 119.99584 * 179.72962 * 2 1 3 12 12 O 1.21295 * 119.99697 * 180.27927 * 11 2 1 13 13 C 1.50701 * 120.00413 * 0.26911 * 11 2 1 14 14 C 1.54889 * 129.08918 * 299.94860 * 13 11 2 15 15 C 1.57170 * 77.91369 * 180.15921 * 14 13 11 16 16 C 1.54408 * 129.01564 * 179.97438 * 13 11 2 17 17 C 1.54886 * 83.77365 * 317.35429 * 15 14 13 18 18 H 1.08999 * 109.47029 * 94.95032 * 1 2 3 19 19 H 1.09004 * 109.46766 * 214.95202 * 1 2 3 20 20 H 1.08998 * 109.46594 * 334.94998 * 1 2 3 21 21 H 0.97001 * 119.99303 * 180.02562 * 6 5 3 22 22 H 1.09001 * 114.97714 * 291.94774 * 14 13 11 23 23 H 1.08997 * 114.98338 * 67.12690 * 14 13 11 24 24 H 1.09000 * 129.25247 * 179.19845 * 15 14 13 25 25 H 1.09001 * 114.93507 * 293.14122 * 16 13 11 26 26 H 1.09005 * 114.92831 * 68.16132 * 16 13 11 27 27 H 1.09005 * 116.12367 * 290.12327 * 17 15 14 28 28 H 1.09004 * 113.83828 * 154.96586 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1612 1.2273 0.3788 5 6 1.5451 2.3392 -0.4872 6 7 0.4489 2.2512 -1.2067 7 14 2.2893 4.0126 -0.1196 8 1 3.6680 4.0724 -0.6681 9 1 1.4597 5.0720 -0.7476 10 1 2.3316 4.2235 1.3497 11 6 2.1389 -1.1673 0.0055 12 8 3.3518 -1.1673 0.0106 13 6 1.3854 -2.4724 0.0055 14 6 0.3731 -3.0156 1.0444 15 6 0.4173 -4.1790 -0.0115 16 6 1.9383 -3.9140 0.0107 17 6 0.3818 -3.0206 -1.0391 18 1 -0.3633 -0.0887 -1.0238 19 1 -0.3633 -0.8424 0.5888 20 1 -0.3632 0.9310 0.4351 21 1 0.0264 3.0553 -1.5471 22 1 0.7999 -3.2662 2.0155 23 1 -0.5655 -2.4647 1.1042 24 1 -0.1134 -5.1310 -0.0114 25 1 2.4689 -4.2059 -0.8956 26 1 2.4428 -4.2093 0.9307 27 1 -0.5563 -2.4700 -1.1094 28 1 0.8167 -3.2756 -2.0056 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599227158.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:03 Heat of formation + Delta-G solvation = 71.422851 kcal Electronic energy + Delta-G solvation = -12541.226859 eV Core-core repulsion = 10368.452975 eV Total energy + Delta-G solvation = -2172.773884 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.42323 -37.63496 -34.58784 -31.54583 -26.70743 -25.48284 -25.31006 -25.04113 -23.43015 -19.64140 -17.74241 -16.87886 -15.94227 -14.89603 -14.26321 -14.00663 -13.81739 -13.69816 -12.97532 -11.84121 -11.49272 -11.34861 -11.09941 -11.03379 -10.88337 -10.79358 -10.70378 -10.39469 -10.18967 -9.77678 -9.73837 -8.97622 -8.33140 -7.62339 -6.31142 -3.85486 3.19762 3.25793 3.30082 3.75178 4.14383 4.60953 4.75229 4.78034 4.93358 5.01677 5.07238 5.39531 5.58963 5.91253 5.94402 6.07577 6.12239 6.25849 6.30037 6.33415 6.53163 6.80140 6.89026 7.21732 7.58589 8.18181 8.52736 9.21297 9.45880 10.04906 10.74050 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.068308 B = 0.010788 C = 0.009931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.811849 B = 2594.894163 C = 2818.653513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.437 5.437 3 C -0.309 4.309 4 H 0.098 0.902 5 C 0.031 3.969 6 N -0.880 5.880 7 Si 0.927 3.073 8 H -0.272 1.272 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.498 3.502 12 O -0.586 6.586 13 C -0.133 4.133 14 C -0.117 4.117 15 C -0.153 4.153 16 C -0.101 4.101 17 C -0.110 4.110 18 H 0.050 0.950 19 H 0.033 0.967 20 H 0.071 0.929 21 H 0.268 0.732 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.137 0.863 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.537 -7.389 2.099 8.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.155 5.155 3 C -0.437 4.437 4 H 0.116 0.884 5 C -0.172 4.172 6 N -0.518 5.518 7 Si 0.753 3.247 8 H -0.197 1.197 9 H -0.209 1.209 10 H -0.199 1.199 11 C 0.286 3.714 12 O -0.471 6.471 13 C -0.137 4.137 14 C -0.155 4.155 15 C -0.171 4.171 16 C -0.139 4.139 17 C -0.147 4.147 18 H 0.068 0.932 19 H 0.051 0.949 20 H 0.090 0.910 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.155 0.845 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.086 -7.194 2.001 8.512 hybrid contribution 0.115 0.916 0.015 0.923 sum -3.970 -6.278 2.016 7.697 Atomic orbital electron populations 1.21620 0.81272 1.00135 1.00514 1.43448 1.05507 1.04393 1.62129 1.19634 1.00479 0.83967 1.39626 0.88420 1.25341 0.96700 1.00126 0.95055 1.70014 1.20119 1.29687 1.32021 0.85991 0.79028 0.80873 0.78770 1.19740 1.20944 1.19892 1.18381 0.86755 0.82666 0.83640 1.90506 1.13727 1.86845 1.56040 1.23967 0.96680 0.94495 0.98515 1.24654 0.98524 0.95720 0.96598 1.25282 0.97510 0.96919 0.97390 1.23726 0.94775 0.93820 1.01549 1.24084 0.98610 0.95340 0.96688 0.93179 0.94858 0.90998 0.92200 0.91148 0.90295 0.84496 0.91140 0.91161 0.90409 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 7.77 59.85 0.46 2.96 15 2 N -0.44 -11.72 3.01 -122.18 -0.37 -12.09 15 3 C -0.31 -8.91 9.24 -14.93 -0.14 -9.05 15 4 H 0.10 2.93 7.44 -52.48 -0.39 2.54 15 5 C 0.03 0.84 4.99 -17.47 -0.09 0.76 15 6 N -0.88 -23.92 10.94 55.50 0.61 -23.31 15 7 Si 0.93 21.03 29.58 -169.99 -5.03 16.00 15 8 H -0.27 -6.22 7.11 56.52 0.40 -5.81 15 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 11 C 0.50 13.02 7.74 -10.98 -0.08 12.94 15 12 O -0.59 -17.43 16.80 5.54 0.09 -17.33 15 13 C -0.13 -2.67 2.43 -172.28 -0.42 -3.09 15 14 C -0.12 -1.87 7.24 -24.70 -0.18 -2.05 15 15 C -0.15 -2.12 8.58 -105.97 -0.91 -3.03 15 16 C -0.10 -1.69 7.78 -26.72 -0.21 -1.90 15 17 C -0.11 -1.82 7.43 -26.01 -0.19 -2.01 15 18 H 0.05 1.18 7.84 -51.93 -0.41 0.77 15 19 H 0.03 0.65 4.49 -51.93 -0.23 0.42 15 20 H 0.07 1.74 6.77 -51.93 -0.35 1.39 15 21 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 22 H 0.07 1.08 7.91 -51.93 -0.41 0.66 15 23 H 0.08 1.19 6.16 -51.93 -0.32 0.87 15 24 H 0.14 1.45 8.14 -51.93 -0.42 1.03 15 25 H 0.07 1.16 7.94 -51.93 -0.41 0.75 15 26 H 0.07 1.14 7.91 -51.93 -0.41 0.72 15 27 H 0.08 1.25 7.40 -51.93 -0.38 0.86 15 28 H 0.07 1.13 7.93 -51.93 -0.41 0.72 15 LS Contribution 233.09 15.07 3.51 3.51 Total: -1.00 -31.57 233.09 -6.23 -37.79 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -3.29 Total: -0.09 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.75 Total: -4.48 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.24 Total: -35.40 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.09 Total: -17.33 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.57 -6.23 -37.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599227158.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.215 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds