Wall clock time and date at job start Mon Mar 30 2020 01:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99785 * 2 1 4 4 H 1.48506 * 109.47044 * 239.99709 * 3 2 1 5 5 H 1.48501 * 109.47416 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47186 * 119.99767 * 3 2 1 7 7 C 1.37878 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99871 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46939 * 180.02562 * 9 7 2 11 11 C 1.35038 * 130.80327 * 90.00385 * 10 9 7 12 12 O 1.21279 * 135.48401 * 0.37935 * 11 10 9 13 13 C 1.50963 * 89.03633 * 180.38622 * 11 10 9 14 14 H 1.09001 * 115.00462 * 240.97734 * 13 11 10 15 15 C 1.54286 * 113.29698 * 107.15204 * 13 11 10 16 16 C 1.54865 * 104.28846 * 240.98872 * 15 13 11 17 17 C 1.54900 * 102.74465 * 37.75223 * 16 15 13 18 18 C 1.46684 * 130.66199 * 269.89331 * 10 9 7 19 19 H 1.09002 * 117.12747 * 296.48841 * 18 10 9 20 20 H 0.96996 * 119.99739 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47320 * 59.99668 * 9 7 2 22 22 H 1.08996 * 109.47073 * 299.99809 * 9 7 2 23 23 H 1.08996 * 110.47237 * 122.28253 * 15 13 11 24 24 H 1.09001 * 110.57512 * 359.74192 * 15 13 11 25 25 H 1.08998 * 110.75212 * 279.44513 * 16 15 13 26 26 H 1.08993 * 110.91763 * 156.14335 * 16 15 13 27 27 H 1.09002 * 110.49435 * 80.46972 * 17 16 15 28 28 H 1.08997 * 110.49400 * 203.00355 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.7758 -4.2829 1.0247 12 8 2.7195 -4.2264 2.2348 13 6 3.5161 -5.1325 0.0201 14 1 3.2955 -6.1989 0.0671 15 6 5.0206 -4.8021 -0.0676 16 6 5.2270 -4.3459 -1.5330 17 6 3.9335 -3.5459 -1.8273 18 6 2.8236 -4.3409 -1.1101 19 1 2.1604 -4.9029 -1.7677 20 1 -0.4849 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 5.6185 -5.6887 0.1435 24 1 5.2769 -3.9976 0.6218 25 1 5.3087 -5.2061 -2.1975 26 1 6.1052 -3.7065 -1.6215 27 1 4.0066 -2.5383 -1.4180 28 1 3.7438 -3.5084 -2.8999 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687714401.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:52 Heat of formation + Delta-G solvation = -38.291745 kcal Electronic energy + Delta-G solvation = -12406.248912 eV Core-core repulsion = 10228.717445 eV Total energy + Delta-G solvation = -2177.531466 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.17471 -38.13111 -35.83119 -34.52497 -31.22469 -29.40782 -27.15978 -24.87361 -22.85548 -21.54594 -18.83299 -18.76566 -17.87492 -17.59196 -16.70598 -16.28329 -15.28648 -14.78568 -14.66112 -14.29555 -13.71364 -13.39633 -12.92098 -12.66076 -12.61274 -12.44506 -12.19899 -11.85712 -11.78815 -11.69034 -11.41319 -10.73050 -10.48921 -9.55343 -8.27887 -6.43966 1.33858 1.37773 1.45245 1.59155 2.24729 2.38230 2.99888 3.13423 3.55242 3.75520 4.21475 4.30964 4.45509 4.49282 4.65594 4.82705 4.86411 5.01123 5.08770 5.18520 5.23314 5.33710 5.53819 5.55273 5.81635 5.99408 6.16870 6.64449 7.20793 7.45242 8.78914 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.040642 B = 0.011816 C = 0.010673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.783948 B = 2369.110302 C = 2622.749326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.251 3.749 10 N -0.613 5.613 11 C 0.502 3.498 12 O -0.577 6.577 13 C -0.134 4.134 14 H 0.149 0.851 15 C -0.105 4.105 16 C -0.103 4.103 17 C -0.134 4.134 18 C 0.129 3.871 19 H 0.137 0.863 20 H 0.269 0.731 21 H 0.027 0.973 22 H -0.009 1.009 23 H 0.106 0.894 24 H 0.040 0.960 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.736 -9.364 -7.329 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.130 3.870 10 N -0.346 5.346 11 C 0.290 3.710 12 O -0.457 6.457 13 C -0.155 4.155 14 H 0.166 0.834 15 C -0.143 4.143 16 C -0.140 4.140 17 C -0.172 4.172 18 C 0.027 3.973 19 H 0.155 0.845 20 H 0.078 0.922 21 H 0.045 0.955 22 H 0.009 0.991 23 H 0.124 0.876 24 H 0.059 0.941 25 H 0.124 0.876 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.402 -9.064 -6.732 14.693 hybrid contribution -0.417 1.377 0.507 1.526 sum 8.986 -7.687 -6.224 13.363 Atomic orbital electron populations 1.70039 1.07591 1.28425 1.50662 1.25898 0.95827 1.03134 0.94235 0.85467 0.78357 0.77953 0.79081 1.18365 1.20123 1.20284 1.21691 0.93331 0.91741 1.51718 0.92669 1.18842 0.88080 0.84529 0.95533 1.51344 1.43095 1.32393 1.07728 1.22436 0.79875 0.82585 0.86108 1.90603 1.67715 1.73269 1.14129 1.24317 0.97827 1.01947 0.91402 0.83373 1.22147 0.91865 1.02064 0.98223 1.22541 0.96282 1.00367 0.94807 1.22618 0.94636 0.98827 1.01168 1.23463 0.93359 0.90298 0.90151 0.84533 0.92224 0.95519 0.99096 0.87584 0.94100 0.87605 0.90476 0.93378 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.15 13.29 21.45 0.28 -55.86 15 2 C 0.01 0.48 5.46 84.65 0.46 0.95 15 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 15 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 7 C -0.55 -31.79 9.16 25.60 0.23 -31.55 15 8 H 0.06 3.18 6.98 -2.91 -0.02 3.16 15 9 C 0.25 13.84 6.37 85.63 0.55 14.39 15 10 N -0.61 -27.42 2.93 -896.97 -2.63 -30.04 15 11 C 0.50 22.34 9.07 87.70 0.80 23.14 15 12 O -0.58 -30.87 18.03 -3.02 -0.05 -30.93 15 13 C -0.13 -3.83 4.79 -10.18 -0.05 -3.88 15 14 H 0.15 3.13 8.14 -2.39 -0.02 3.11 15 15 C -0.10 -2.52 6.53 31.67 0.21 -2.32 15 16 C -0.10 -2.04 6.91 31.88 0.22 -1.82 15 17 C -0.13 -3.72 6.67 31.66 0.21 -3.51 15 18 C 0.13 3.93 5.72 45.84 0.26 4.20 15 19 H 0.14 3.29 8.14 -2.39 -0.02 3.27 15 20 H 0.27 15.23 8.31 -92.71 -0.77 14.46 15 21 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15 22 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 15 23 H 0.11 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.04 1.24 7.85 -2.39 -0.02 1.22 15 25 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 27 H 0.05 1.77 6.99 -2.39 -0.02 1.75 15 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 15 Total: -1.00 -73.76 241.05 3.66 -70.10 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: 1.14 Total: 0.27 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 2.89 Total: -0.40 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -2.34 Total: -85.90 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.05 Total: -30.93 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -73.76 3.66 -70.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714401.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.803 kcal (2) G-P(sol) polarization free energy of solvation -73.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds