Wall clock time and date at job start Mon Mar 30 2020 01:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48497 * 109.47238 * 269.99905 * 3 2 1 5 5 H 1.48501 * 109.47317 * 30.00176 * 3 2 1 6 6 H 1.48507 * 109.47033 * 150.00166 * 3 2 1 7 7 C 1.40044 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99929 * 0.02562 * 7 2 1 10 10 O 1.21685 * 119.99654 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99737 * 180.02562 * 9 7 2 12 12 C 1.49243 * 126.71323 * 179.97438 * 11 9 7 13 13 C 1.50767 * 104.77466 * 171.61231 * 12 11 9 14 14 H 1.08999 * 112.66676 * 281.52004 * 13 12 11 15 15 C 1.49455 * 131.25876 * 123.12480 * 13 12 11 16 16 C 1.56695 * 80.74572 * 224.92347 * 15 13 12 17 17 C 1.49748 * 81.07798 * 46.00094 * 16 15 13 18 18 H 1.09007 * 114.09085 * 69.29497 * 17 16 15 19 19 C 1.49857 * 126.84065 * 359.93238 * 11 9 7 20 20 H 0.97006 * 119.99689 * 359.97438 * 1 2 3 21 21 H 1.09002 * 110.39921 * 52.75573 * 12 11 9 22 22 H 1.09004 * 110.39620 * 290.46874 * 12 11 9 23 23 H 1.09006 * 114.64546 * 337.89039 * 15 13 12 24 24 H 1.09000 * 114.64713 * 111.95738 * 15 13 12 25 25 H 1.08995 * 114.59427 * 292.95030 * 16 15 13 26 26 H 1.09003 * 114.63479 * 159.05053 * 16 15 13 27 27 H 1.09008 * 110.88412 * 34.25118 * 19 11 9 28 28 H 1.08996 * 111.05011 * 270.55589 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4382 2.6527 0.7001 6 1 3.5384 1.4401 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0582 -2.4804 -0.0026 11 7 1.9490 -3.6477 -0.0017 12 6 1.3590 -5.0186 -0.0022 13 6 2.5319 -5.9418 -0.2146 14 1 2.8503 -5.9836 -1.2562 15 6 3.0474 -7.0839 0.6000 16 6 4.4036 -6.3626 0.2906 17 6 3.5907 -5.1689 0.6864 18 1 3.3338 -5.1367 1.7452 19 6 3.4369 -3.8261 -0.0020 20 1 -0.4850 0.8401 0.0004 21 1 0.6412 -5.1230 -0.8158 22 1 0.8803 -5.2265 0.9547 23 1 2.7510 -7.0644 1.6488 24 1 2.9359 -8.0623 0.1328 25 1 4.6992 -6.3828 -0.7583 26 1 5.2148 -6.6068 0.9766 27 1 3.9231 -3.0365 0.5710 28 1 3.8265 -3.8631 -1.0193 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688282286.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:21 Heat of formation + Delta-G solvation = 46.339161 kcal Electronic energy + Delta-G solvation = -12344.055964 eV Core-core repulsion = 10170.194369 eV Total energy + Delta-G solvation = -2173.861595 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.82430 -36.69771 -33.47232 -32.39722 -28.55346 -27.27423 -25.46030 -23.22386 -20.67469 -20.45481 -19.00225 -16.58822 -15.49106 -14.91756 -14.31895 -14.22617 -13.96729 -13.08746 -12.66874 -12.11631 -11.75877 -11.55651 -11.35096 -11.09576 -11.03287 -10.86926 -10.66599 -10.49427 -10.23758 -10.12111 -8.84373 -8.67939 -7.61020 -7.19348 -6.18155 -4.62673 3.14874 3.21210 3.24956 3.95048 4.08007 4.40548 4.54959 4.60801 4.94437 5.18121 5.64305 5.68088 5.77171 5.78426 5.93347 6.01305 6.02540 6.18274 6.33466 6.42934 6.47388 6.70087 6.77275 7.25133 7.45306 8.11727 8.43131 9.03252 9.52512 10.59583 10.78677 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.066270 B = 0.009797 C = 0.008721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.409818 B = 2857.409150 C = 3209.788795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.086 3.914 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.574 3.426 10 O -0.577 6.577 11 N -0.651 5.651 12 C 0.136 3.864 13 C -0.167 4.167 14 H 0.095 0.905 15 C -0.105 4.105 16 C -0.107 4.107 17 C -0.167 4.167 18 H 0.100 0.900 19 C 0.138 3.862 20 H 0.268 0.732 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.749 -8.879 0.568 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.088 0.912 9 C 0.380 3.620 10 O -0.460 6.460 11 N -0.392 5.392 12 C 0.013 3.987 13 C -0.186 4.186 14 H 0.113 0.887 15 C -0.143 4.143 16 C -0.145 4.145 17 C -0.186 4.186 18 H 0.118 0.882 19 C 0.015 3.985 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.107 0.893 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.795 -8.620 0.561 11.635 hybrid contribution 0.448 0.837 -0.043 0.950 sum 8.244 -7.783 0.518 11.349 Atomic orbital electron populations 1.70030 1.07088 1.27296 1.35409 1.25740 0.94639 1.00318 0.92627 0.86350 0.80139 0.81290 0.78854 1.19701 1.20422 1.18864 1.20891 0.93593 0.88917 1.54156 0.91245 1.18042 0.86623 0.81108 0.76195 1.90608 1.13898 1.85843 1.55608 1.50182 1.04203 1.04207 1.80618 1.20702 0.93963 0.83909 1.00126 1.23428 0.98290 0.98043 0.98871 0.88694 1.22691 0.95784 0.96024 0.99793 1.22742 0.95445 0.94958 1.01356 1.23748 1.00575 0.94685 0.99640 0.88163 1.21256 0.84207 0.94831 0.98212 0.92079 0.92944 0.93512 0.89303 0.91802 0.89308 0.91756 0.91255 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.61 11.83 55.55 0.66 -22.95 15 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 15 3 Si 0.91 20.47 29.56 -169.99 -5.02 15.45 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 15 7 C -0.54 -15.72 9.05 -35.63 -0.32 -16.04 15 8 H 0.07 1.86 6.70 -52.49 -0.35 1.51 15 9 C 0.57 17.25 7.83 -12.98 -0.10 17.15 15 10 O -0.58 -19.64 15.42 5.20 0.08 -19.56 15 11 N -0.65 -15.81 3.44 -172.37 -0.59 -16.40 15 12 C 0.14 2.79 6.77 -3.64 -0.02 2.77 15 13 C -0.17 -2.57 4.28 -105.40 -0.45 -3.03 15 14 H 0.09 1.42 7.37 -51.93 -0.38 1.04 15 15 C -0.11 -1.25 8.10 -40.16 -0.33 -1.58 15 16 C -0.11 -1.24 8.07 -41.64 -0.34 -1.58 15 17 C -0.17 -2.56 4.43 -103.19 -0.46 -3.02 15 18 H 0.10 1.59 7.59 -51.93 -0.39 1.19 15 19 C 0.14 2.66 6.42 -2.84 -0.02 2.64 15 20 H 0.27 7.44 8.29 -40.82 -0.34 7.10 15 21 H 0.05 1.13 8.14 -51.93 -0.42 0.70 15 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.09 1.04 7.61 -51.93 -0.40 0.64 15 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 15 25 H 0.09 0.96 7.51 -51.93 -0.39 0.57 15 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 27 H 0.07 1.36 7.20 -51.92 -0.37 0.99 15 28 H 0.05 0.90 8.11 -51.93 -0.42 0.48 15 LS Contribution 234.96 15.07 3.54 3.54 Total: -1.00 -34.65 234.96 -7.00 -41.65 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -3.53 Total: -1.40 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.13 Total: -0.32 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.06 Total: -39.36 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.08 Total: -19.56 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -34.65 -7.00 -41.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688282286.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.990 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds