Wall clock time and date at job start Mon Mar 30 2020 02:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35705 * 126.22345 * 2 1 4 4 N 1.40803 * 126.06808 * 359.97438 * 3 2 1 5 5 C 1.40219 * 107.86394 * 180.02562 * 3 2 1 6 6 N 1.30861 * 108.36384 * 359.97438 * 5 3 2 7 7 N 1.35970 * 126.22352 * 179.68612 * 2 1 3 8 8 C 1.46502 * 126.07055 * 359.96321 * 7 2 1 9 9 C 1.53002 * 109.46892 * 89.99966 * 8 7 2 10 10 C 1.50697 * 109.46662 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00468 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99484 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99922 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00290 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46997 * 90.00309 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00004 * 14 12 10 17 17 H 1.48500 * 109.46960 * 330.00109 * 14 12 10 18 18 H 1.09002 * 109.47152 * 90.02803 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.02903 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.02884 * 1 2 3 21 21 H 0.97003 * 119.99633 * 0.02562 * 4 3 2 22 22 H 0.97001 * 120.00179 * 180.02562 * 4 3 2 23 23 H 1.08006 * 125.81570 * 179.97438 * 5 3 2 24 24 H 1.08994 * 109.46817 * 210.00241 * 8 7 2 25 25 H 1.09003 * 109.46732 * 329.99967 * 8 7 2 26 26 H 1.08995 * 109.46875 * 299.99855 * 9 8 7 27 27 H 1.08997 * 109.46814 * 60.00135 * 9 8 7 28 28 H 0.97004 * 120.00080 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3090 1.0948 0.0000 4 7 1.8807 2.4361 -0.0005 5 6 3.6398 0.6531 -0.0006 6 7 3.6399 -0.6555 -0.0004 7 7 2.3105 -1.0969 0.0060 8 6 1.8650 -2.4925 0.0144 9 6 1.7091 -2.9867 -1.4252 10 6 1.2514 -4.4225 -1.4165 11 1 1.0884 -4.9317 -0.4781 12 6 1.0418 -5.0863 -2.6066 13 7 0.6418 -6.3392 -2.5991 14 14 1.3244 -4.2059 -4.2296 15 1 2.7333 -4.3973 -4.6578 16 1 0.4134 -4.7643 -5.2609 17 1 1.0510 -2.7561 -4.0604 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 0.8903 0.5134 20 1 -0.3633 -0.8898 0.5143 21 1 0.9329 2.6425 -0.0005 22 1 2.5334 3.1536 -0.0008 23 1 4.5155 1.2853 -0.0011 24 1 2.6025 -3.1062 0.5315 25 1 0.9069 -2.5648 0.5292 26 1 0.9715 -2.3729 -1.9421 27 1 2.6672 -2.9143 -1.9399 28 1 0.4939 -6.8062 -3.4364 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697717873.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:44 Heat of formation + Delta-G solvation = 65.761014 kcal Electronic energy + Delta-G solvation = -11984.025364 eV Core-core repulsion = 9843.298715 eV Total energy + Delta-G solvation = -2140.726649 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.66649 -34.80090 -33.58364 -32.38737 -30.84324 -28.56501 -26.01023 -24.81873 -21.45241 -20.28083 -19.22032 -17.12539 -16.15095 -15.72009 -14.91193 -14.71133 -14.11942 -13.56388 -13.04301 -12.78761 -12.50319 -12.46266 -11.79124 -11.61735 -11.09445 -10.80726 -10.37217 -10.08629 -10.03644 -9.89367 -9.36939 -8.64232 -8.61541 -6.77612 -6.13561 -4.14012 2.38161 3.09806 3.28027 3.33291 3.35081 3.40179 4.35043 4.38965 5.10602 5.19990 5.24924 5.40038 5.73412 5.76679 5.94585 6.06685 6.12493 6.37288 6.45181 6.82497 7.06537 7.20683 7.48868 7.72436 7.90761 8.08245 8.33280 8.38655 8.87812 9.47712 10.99021 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.051116 B = 0.009003 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.643217 B = 3109.246108 C = 3135.145287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.005 3.995 3 C 0.040 3.960 4 N -0.880 5.880 5 C -0.009 4.009 6 N -0.277 5.277 7 N -0.349 5.349 8 C 0.145 3.855 9 C -0.023 4.023 10 C -0.525 4.525 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.898 5.898 14 Si 0.879 3.121 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.266 1.266 18 H 0.072 0.928 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.390 0.610 22 H 0.392 0.608 23 H 0.173 0.827 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 15.152 4.301 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C -0.068 4.068 4 N -0.428 5.428 5 C -0.196 4.196 6 N -0.101 5.101 7 N -0.136 5.136 8 C 0.025 3.975 9 C -0.061 4.061 10 C -0.564 4.564 11 H 0.094 0.906 12 C -0.129 4.129 13 N -0.536 5.536 14 Si 0.706 3.294 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.191 1.191 18 H 0.090 0.910 19 H 0.088 0.912 20 H 0.090 0.910 21 H 0.217 0.783 22 H 0.219 0.781 23 H 0.190 0.810 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.972 13.682 4.196 14.344 hybrid contribution -0.405 1.395 -0.995 1.761 sum 0.567 15.078 3.201 15.424 Atomic orbital electron populations 1.20206 0.87988 1.02716 1.02716 1.20316 0.94034 0.86731 1.11434 1.17370 0.91909 0.85560 1.11980 1.41385 1.08538 1.02000 1.90837 1.23329 0.96040 0.92503 1.07681 1.77205 0.98813 1.11572 1.22487 1.48792 1.02432 1.06408 1.55973 1.21925 0.99718 0.74519 1.01309 1.19928 0.97425 0.97475 0.91271 1.20886 1.46247 0.94316 0.94919 0.90577 1.24934 0.94198 0.94631 0.99108 1.69899 1.46265 1.10104 1.27323 0.86787 0.78506 0.80509 0.83588 1.20100 1.21184 1.19105 0.90979 0.91220 0.91015 0.78270 0.78086 0.81041 0.89422 0.89608 0.96078 0.96069 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.95 36.01 0.36 -0.71 15 2 C 0.01 0.09 6.98 -81.66 -0.57 -0.48 15 3 C 0.04 0.63 7.22 -83.89 -0.61 0.02 15 4 N -0.88 -9.94 9.19 32.30 0.30 -9.65 15 5 C -0.01 -0.15 12.03 -17.22 -0.21 -0.36 15 6 N -0.28 -5.48 12.57 30.70 0.39 -5.10 15 7 N -0.35 -6.87 3.64 -56.80 -0.21 -7.08 15 8 C 0.15 2.98 6.20 -4.04 -0.03 2.95 15 9 C -0.02 -0.55 4.36 -27.88 -0.12 -0.67 15 10 C -0.53 -14.69 9.66 -34.44 -0.33 -15.02 15 11 H 0.08 2.23 7.99 -52.49 -0.42 1.81 15 12 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 13 N -0.90 -27.28 13.96 55.43 0.77 -26.51 15 14 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 15 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 17 H -0.27 -6.52 6.54 56.52 0.37 -6.15 15 18 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 19 H 0.07 0.75 7.61 -51.93 -0.39 0.36 15 20 H 0.07 0.98 7.11 -51.93 -0.37 0.61 15 21 H 0.39 3.76 8.22 -40.82 -0.34 3.43 15 22 H 0.39 3.54 8.96 -40.82 -0.37 3.17 15 23 H 0.17 2.18 8.06 -52.48 -0.42 1.76 15 24 H 0.09 1.80 8.14 -51.93 -0.42 1.37 15 25 H 0.09 1.60 7.09 -51.93 -0.37 1.24 15 26 H 0.02 0.51 7.20 -51.93 -0.37 0.14 15 27 H 0.02 0.54 7.57 -51.93 -0.39 0.15 15 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15 LS Contribution 243.85 15.07 3.67 3.67 Total: -1.00 -32.18 243.85 -4.80 -36.98 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.45 Total: 2.62 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -1.60 Total: -12.24 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 1.25 Total: -48.33 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.18 -4.80 -36.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697717873.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.741 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds