Wall clock time and date at job start Mon Mar 30 2020 02:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99448 * 2 1 4 4 H 1.48506 * 109.47177 * 269.99194 * 3 2 1 5 5 H 1.48500 * 109.47399 * 29.99583 * 3 2 1 6 6 H 1.48506 * 109.47125 * 150.00036 * 3 2 1 7 7 C 1.37871 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47275 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46957 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46909 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47171 * 179.97438 * 12 11 10 14 14 C 1.35308 * 125.86965 * 124.99697 * 13 12 11 15 15 C 1.35347 * 106.17713 * 179.97438 * 14 13 12 16 16 N 1.33774 * 106.49812 * 0.02562 * 15 14 13 17 17 N 1.28637 * 108.88333 * 0.02562 * 16 15 14 18 18 H 0.96995 * 120.00612 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47230 * 60.00209 * 9 7 2 20 20 H 1.09009 * 109.47174 * 300.00585 * 9 7 2 21 21 H 1.08995 * 109.47501 * 60.00152 * 10 9 7 22 22 H 1.08997 * 109.46677 * 299.99534 * 10 9 7 23 23 H 1.08995 * 109.47091 * 59.99655 * 11 10 9 24 24 H 1.08996 * 109.46859 * 299.99740 * 11 10 9 25 25 H 1.09002 * 109.46649 * 59.99895 * 12 11 10 26 26 H 1.09000 * 109.47178 * 300.00172 * 12 11 10 27 27 H 1.07997 * 126.91159 * 359.97438 * 14 13 12 28 28 H 1.08002 * 126.75518 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4463 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4805 -4.9871 0.0033 12 6 2.4748 -6.1500 0.0037 13 7 1.7424 -7.4187 0.0048 14 6 1.8903 -8.4203 -0.8928 15 6 1.0272 -9.3932 -0.5178 16 7 0.4013 -8.9448 0.5761 17 7 0.8469 -7.7718 0.8594 18 1 -0.4851 0.8399 -0.0004 19 1 0.6242 -2.5575 -0.8880 20 1 0.6247 -2.5563 0.8920 21 1 2.8721 -3.6035 0.8926 22 1 2.8720 -3.6050 -0.8873 23 1 0.8541 -5.0453 -0.8868 24 1 0.8536 -5.0443 0.8931 25 1 3.1015 -6.0917 0.8936 26 1 3.1014 -6.0925 -0.8863 27 1 2.5619 -8.4397 -1.7383 28 1 0.8734 -10.3441 -1.0063 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699143342.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:24 Heat of formation + Delta-G solvation = 75.711743 kcal Electronic energy + Delta-G solvation = -11496.225248 eV Core-core repulsion = 9355.930095 eV Total energy + Delta-G solvation = -2140.295153 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.14455 -36.11518 -33.79973 -32.09566 -30.97027 -28.96116 -25.56225 -23.01513 -22.52858 -21.05382 -20.24442 -17.37417 -16.47685 -16.09337 -15.16141 -14.76800 -14.50851 -14.10263 -12.98375 -12.80381 -12.14996 -11.85153 -11.63437 -11.18760 -10.91637 -10.78722 -10.65741 -10.59314 -10.07116 -9.81031 -9.40927 -9.34685 -9.11234 -8.39122 -6.03560 -4.06930 1.68122 2.45861 2.63368 3.28981 3.35604 3.38372 4.41715 4.43863 4.63333 4.95988 5.04020 5.22633 5.25409 5.32131 5.63444 5.81862 5.90777 6.14686 6.25939 6.56052 6.64475 6.71987 7.00795 7.62005 7.74718 7.95435 8.36426 8.58843 9.00217 9.57541 11.07713 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.106957 B = 0.005548 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 261.724518 B = 5045.807938 C = 5186.634842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.131 4.131 12 C 0.111 3.889 13 N -0.282 5.282 14 C -0.055 4.055 15 C -0.060 4.060 16 N -0.281 5.281 17 N -0.080 5.080 18 H 0.261 0.739 19 H 0.016 0.984 20 H 0.018 0.982 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.188 0.812 28 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 -13.654 -3.127 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.169 4.169 12 C -0.009 4.009 13 N -0.076 5.076 14 C -0.207 4.207 15 C -0.217 4.217 16 N -0.147 5.147 17 N -0.060 5.060 18 H 0.071 0.929 19 H 0.034 0.966 20 H 0.036 0.964 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.205 0.795 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.130 -13.105 -1.848 14.194 hybrid contribution 1.140 0.712 -1.145 1.766 sum 6.270 -12.393 -2.993 14.208 Atomic orbital electron populations 1.69963 1.06082 1.26699 1.50588 1.25037 0.94854 0.99325 0.95273 0.86589 0.79830 0.83454 0.78089 1.20666 1.21179 1.19869 1.21232 0.93005 0.91048 1.50903 0.92649 1.19088 0.93939 0.91130 0.97464 1.21600 0.99251 0.92966 1.00678 1.22017 0.97865 0.93361 1.03682 1.22478 0.94875 0.78560 1.05019 1.47771 1.26566 1.15177 1.18113 1.23709 1.06524 0.90382 1.00077 1.23591 0.98656 1.01972 0.97515 1.75118 1.22113 1.03265 1.14197 1.78332 1.03698 1.09190 1.14784 0.92921 0.96573 0.96380 0.92796 0.93015 0.91604 0.90419 0.88296 0.87767 0.79505 0.79665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.15 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 15 10 C -0.11 -2.00 5.15 -26.73 -0.14 -2.14 15 11 C -0.13 -2.07 5.34 -26.73 -0.14 -2.22 15 12 C 0.11 1.33 6.46 -4.04 -0.03 1.30 15 13 N -0.28 -3.83 3.44 -61.26 -0.21 -4.04 15 14 C -0.06 -0.60 11.57 -17.05 -0.20 -0.79 15 15 C -0.06 -0.71 12.05 -17.74 -0.21 -0.92 15 16 N -0.28 -4.52 12.41 30.24 0.38 -4.14 15 17 N -0.08 -1.33 12.91 60.35 0.78 -0.55 15 18 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 19 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 20 H 0.02 0.49 8.14 -51.92 -0.42 0.06 15 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.08 1.36 8.12 -51.93 -0.42 0.93 15 25 H 0.10 1.09 8.14 -51.93 -0.42 0.66 15 26 H 0.10 0.94 8.07 -51.93 -0.42 0.52 15 27 H 0.19 1.20 8.06 -52.49 -0.42 0.78 15 28 H 0.19 1.47 8.06 -52.49 -0.42 1.05 15 LS Contribution 250.22 15.07 3.77 3.77 Total: -1.00 -32.67 250.22 -4.60 -37.27 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: -3.76 Total: -4.80 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -1.27 Total: -17.76 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 1.68 Total: -34.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.67 -4.60 -37.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699143342.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.979 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds