Wall clock time and date at job start Mon Mar 30 2020 02:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99448 * 2 1 4 4 H 1.48506 * 109.47177 * 269.99194 * 3 2 1 5 5 H 1.48500 * 109.47399 * 29.99583 * 3 2 1 6 6 H 1.48506 * 109.47125 * 150.00036 * 3 2 1 7 7 C 1.37871 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47275 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46957 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46909 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47171 * 179.97438 * 12 11 10 14 14 C 1.35308 * 125.86965 * 124.99697 * 13 12 11 15 15 C 1.35347 * 106.17713 * 179.97438 * 14 13 12 16 16 N 1.33774 * 106.49812 * 0.02562 * 15 14 13 17 17 N 1.28637 * 108.88333 * 0.02562 * 16 15 14 18 18 H 0.96995 * 120.00612 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47230 * 60.00209 * 9 7 2 20 20 H 1.09009 * 109.47174 * 300.00585 * 9 7 2 21 21 H 1.08995 * 109.47501 * 60.00152 * 10 9 7 22 22 H 1.08997 * 109.46677 * 299.99534 * 10 9 7 23 23 H 1.08995 * 109.47091 * 59.99655 * 11 10 9 24 24 H 1.08996 * 109.46859 * 299.99740 * 11 10 9 25 25 H 1.09002 * 109.46649 * 59.99895 * 12 11 10 26 26 H 1.09000 * 109.47178 * 300.00172 * 12 11 10 27 27 H 1.07997 * 126.91159 * 359.97438 * 14 13 12 28 28 H 1.08002 * 126.75518 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4463 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4805 -4.9871 0.0033 12 6 2.4748 -6.1500 0.0037 13 7 1.7424 -7.4187 0.0048 14 6 1.8903 -8.4203 -0.8928 15 6 1.0272 -9.3932 -0.5178 16 7 0.4013 -8.9448 0.5761 17 7 0.8469 -7.7718 0.8594 18 1 -0.4851 0.8399 -0.0004 19 1 0.6242 -2.5575 -0.8880 20 1 0.6247 -2.5563 0.8920 21 1 2.8721 -3.6035 0.8926 22 1 2.8720 -3.6050 -0.8873 23 1 0.8541 -5.0453 -0.8868 24 1 0.8536 -5.0443 0.8931 25 1 3.1015 -6.0917 0.8936 26 1 3.1014 -6.0925 -0.8863 27 1 2.5619 -8.4397 -1.7383 28 1 0.8734 -10.3441 -1.0063 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699143342.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:24 Heat of formation + Delta-G solvation = 53.643130 kcal Electronic energy + Delta-G solvation = -11497.182215 eV Core-core repulsion = 9355.930095 eV Total energy + Delta-G solvation = -2141.252120 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.12191 -37.41274 -35.47610 -33.81424 -31.91081 -30.54768 -27.19462 -24.56005 -23.52921 -22.26732 -21.77004 -18.50304 -18.30024 -17.29927 -16.50675 -16.34317 -15.73437 -15.08851 -14.60148 -14.23074 -13.79091 -13.58732 -12.94672 -12.67535 -12.44557 -12.36825 -12.32345 -11.82700 -11.51980 -11.41769 -11.25475 -10.88099 -10.56538 -10.29000 -8.20669 -6.32558 0.74132 1.40337 1.41930 1.52791 1.55548 1.68167 2.40726 3.12892 3.56059 3.76205 3.88245 4.20048 4.29830 4.37033 4.43040 4.54831 4.72072 4.87592 5.06945 5.21716 5.24675 5.34400 5.52527 5.73080 5.74191 5.85343 6.22384 6.86265 7.37572 7.58787 8.91437 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.106957 B = 0.005548 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 261.724518 B = 5045.807938 C = 5186.634842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.019 3.981 10 C -0.092 4.092 11 C -0.120 4.120 12 C 0.117 3.883 13 N -0.288 5.288 14 C -0.035 4.035 15 C -0.069 4.069 16 N -0.319 5.319 17 N -0.136 5.136 18 H 0.263 0.737 19 H -0.012 1.012 20 H -0.016 1.016 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.147 0.853 27 H 0.238 0.762 28 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.573 -14.177 -4.399 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.018 4.018 10 C -0.130 4.130 11 C -0.159 4.159 12 C -0.002 4.002 13 N -0.082 5.082 14 C -0.187 4.187 15 C -0.227 4.227 16 N -0.184 5.184 17 N -0.115 5.115 18 H 0.071 0.929 19 H 0.007 0.993 20 H 0.002 0.998 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.129 0.871 26 H 0.165 0.835 27 H 0.254 0.746 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 7.654 -13.636 -3.102 15.942 hybrid contribution 0.333 0.812 -0.806 1.192 sum 7.987 -12.824 -3.909 15.605 Atomic orbital electron populations 1.70116 1.08036 1.27769 1.51870 1.26059 0.95741 1.03685 0.94820 0.85415 0.78684 0.78219 0.78535 1.19639 1.21166 1.18362 1.21750 0.93828 0.92167 1.50221 0.91414 1.19044 0.94661 0.93644 0.94494 1.21354 0.97877 0.91695 1.02075 1.21748 0.98188 0.94008 1.01938 1.22478 0.93510 0.76462 1.07785 1.47897 1.26137 1.15933 1.18241 1.24531 1.05778 0.88613 0.99794 1.24312 0.98245 1.03645 0.96525 1.75048 1.23445 1.03629 1.16289 1.78308 1.06042 1.10121 1.17007 0.92866 0.99333 0.99788 0.91838 0.90939 0.92639 0.93102 0.87081 0.83529 0.74590 0.76299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 13.29 21.45 0.28 -57.46 15 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 15 3 Si 0.97 43.77 29.54 68.60 2.03 45.79 15 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 15 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 7 C -0.54 -30.23 9.11 25.60 0.23 -29.99 15 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 15 9 C 0.02 0.97 4.97 29.85 0.15 1.12 15 10 C -0.09 -3.36 5.15 30.60 0.16 -3.20 15 11 C -0.12 -3.75 5.34 30.60 0.16 -3.59 15 12 C 0.12 2.48 6.46 86.38 0.56 3.04 15 13 N -0.29 -7.23 3.44 -347.74 -1.20 -8.42 15 14 C -0.04 -0.63 11.57 83.49 0.97 0.33 15 15 C -0.07 -1.48 12.05 83.73 1.01 -0.47 15 16 N -0.32 -10.16 12.41 -58.26 -0.72 -10.89 15 17 N -0.14 -4.53 12.91 37.02 0.48 -4.05 15 18 H 0.26 15.21 8.31 -92.71 -0.77 14.44 15 19 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 15 20 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 15 21 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.05 1.84 8.12 -2.39 -0.02 1.82 15 25 H 0.11 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.15 1.89 8.07 -2.39 -0.02 1.87 15 27 H 0.24 1.60 8.06 -2.91 -0.02 1.58 15 28 H 0.22 2.78 8.06 -2.91 -0.02 2.76 15 Total: -1.00 -74.15 250.22 5.69 -68.46 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: 1.13 Total: -0.80 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 3.70 Total: -32.63 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.16 Total: -80.82 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -74.15 5.69 -68.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699143342.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.099 kcal (2) G-P(sol) polarization free energy of solvation -74.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds