Wall clock time and date at job start Mon Mar 30 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37091 * 120.00025 * 2 1 4 4 H 1.08002 * 120.00196 * 222.87404 * 3 2 1 5 5 C 1.38952 * 120.00028 * 42.88425 * 3 2 1 6 6 N 1.31415 * 119.99907 * 199.51456 * 5 3 2 7 7 Si 1.86794 * 120.00142 * 19.50756 * 5 3 2 8 8 H 1.48505 * 109.47264 * 268.11416 * 7 5 3 9 9 H 1.48502 * 109.47212 * 28.10813 * 7 5 3 10 10 H 1.48499 * 109.47443 * 148.11021 * 7 5 3 11 11 C 1.34776 * 119.99765 * 179.97438 * 2 1 3 12 12 O 1.21300 * 120.00110 * 179.97438 * 11 2 1 13 13 C 1.50704 * 120.00273 * 0.02562 * 11 2 1 14 14 H 1.09005 * 115.54583 * 34.27816 * 13 11 2 15 15 C 1.52994 * 117.49959 * 248.60512 * 13 11 2 16 16 C 1.52987 * 59.99920 * 252.51259 * 15 13 11 17 17 C 1.52995 * 138.59127 * 130.89772 * 16 15 13 18 18 C 1.53002 * 138.58555 * 229.11170 * 16 15 13 19 19 H 1.09006 * 109.46782 * 93.02092 * 1 2 3 20 20 H 1.08996 * 109.47204 * 213.02103 * 1 2 3 21 21 H 1.09002 * 109.47098 * 333.02625 * 1 2 3 22 22 H 0.97000 * 120.00027 * 180.02562 * 6 5 3 23 23 H 1.09002 * 117.50036 * 0.02562 * 15 13 11 24 24 H 1.09001 * 117.50045 * 145.01580 * 15 13 11 25 25 H 1.09001 * 117.50025 * 238.37562 * 17 16 15 26 26 H 1.08998 * 117.49843 * 23.40047 * 17 16 15 27 27 H 1.09004 * 117.49632 * 336.59062 * 18 16 15 28 28 H 1.08997 * 117.49642 * 121.59143 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0141 1.3122 -0.6364 5 6 1.7343 2.2298 0.8189 6 7 2.1182 3.4602 0.5626 7 14 0.6288 1.8825 2.2840 8 1 -0.7923 2.0193 1.8753 9 1 0.8727 0.5012 2.7718 10 1 0.9270 2.8507 3.3697 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4724 0.0005 14 1 0.4467 -2.4733 -0.5538 15 6 1.4604 -3.3314 1.2643 16 6 2.2074 -3.7626 0.0008 17 6 3.6073 -4.2314 -0.4009 18 6 2.3766 -5.0156 -0.8609 19 1 -0.3633 -0.0542 -1.0263 20 1 -0.3633 -0.8616 0.5600 21 1 -0.3633 0.9159 0.4661 22 1 1.8280 4.1879 1.1344 23 1 2.0544 -2.9524 2.0960 24 1 0.5712 -3.8978 1.5414 25 1 4.1389 -3.6445 -1.1500 26 1 4.2293 -4.6800 0.3735 27 1 2.1890 -5.9800 -0.3889 28 1 2.0982 -4.9446 -1.9123 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705148517.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:11 Heat of formation + Delta-G solvation = 38.372045 kcal Electronic energy + Delta-G solvation = -12276.216145 eV Core-core repulsion = 10102.009070 eV Total energy + Delta-G solvation = -2174.207075 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.13361 -36.99973 -34.61309 -32.36434 -31.77008 -26.47215 -25.44382 -22.57151 -22.13417 -19.68233 -17.96564 -17.01045 -16.21553 -15.40478 -14.76195 -14.56829 -14.21688 -13.63197 -12.72166 -12.56961 -12.27581 -11.91252 -11.54187 -11.30822 -11.17259 -10.79567 -10.37359 -9.96776 -9.82651 -9.70585 -9.62156 -8.99687 -8.42219 -7.62478 -6.35484 -3.98375 3.05328 3.22964 3.30444 3.48360 3.88465 4.18556 4.21107 4.51515 4.79689 4.96826 5.14840 5.32204 5.69321 5.75811 5.80960 5.88232 5.91435 5.96981 6.00594 6.18178 6.19199 6.33344 6.38697 6.44776 7.61541 8.34729 8.57980 9.01095 9.34410 9.84367 10.76653 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.058922 B = 0.010965 C = 0.010215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.088757 B = 2553.019378 C = 2740.344484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.473 5.473 3 C -0.315 4.315 4 H 0.101 0.899 5 C 0.060 3.940 6 N -0.868 5.868 7 Si 0.880 3.120 8 H -0.274 1.274 9 H -0.264 1.264 10 H -0.287 1.287 11 C 0.494 3.506 12 O -0.556 6.556 13 C -0.130 4.130 14 H 0.113 0.887 15 C -0.108 4.108 16 C -0.202 4.202 17 C -0.113 4.113 18 C -0.136 4.136 19 H 0.049 0.951 20 H 0.054 0.946 21 H 0.066 0.934 22 H 0.273 0.727 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 -12.329 0.497 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.195 5.195 3 C -0.442 4.442 4 H 0.119 0.881 5 C -0.145 4.145 6 N -0.505 5.505 7 Si 0.707 3.293 8 H -0.201 1.201 9 H -0.188 1.188 10 H -0.214 1.214 11 C 0.282 3.718 12 O -0.437 6.437 13 C -0.151 4.151 14 H 0.131 0.869 15 C -0.145 4.145 16 C -0.203 4.203 17 C -0.150 4.150 18 C -0.173 4.173 19 H 0.067 0.933 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.812 -12.081 0.539 13.015 hybrid contribution -0.814 0.134 0.791 1.143 sum -5.625 -11.947 1.330 13.272 Atomic orbital electron populations 1.22016 0.83500 1.01515 1.00857 1.43587 1.04034 1.05400 1.66474 1.19001 1.14176 0.86925 1.24139 0.88119 1.25432 0.97158 0.94806 0.97109 1.69740 1.44588 0.98808 1.37342 0.86902 0.79918 0.79195 0.83242 1.20119 1.18804 1.21407 1.19516 0.87616 0.83684 0.80999 1.90545 1.13744 1.86839 1.52571 1.22108 1.00071 0.90303 1.02632 0.86912 1.22601 1.00882 1.00356 0.90705 1.21105 1.01065 0.96274 1.01819 1.22503 0.89319 1.00741 1.02388 1.22707 1.02429 0.93412 0.98744 0.93282 0.92690 0.91591 0.91641 0.88375 0.88390 0.88265 0.89014 0.88922 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.31 8.60 59.85 0.51 1.83 15 2 N -0.47 -11.91 2.48 -122.19 -0.30 -12.22 15 3 C -0.32 -9.23 9.27 -14.94 -0.14 -9.37 15 4 H 0.10 3.30 8.01 -52.49 -0.42 2.88 15 5 C 0.06 1.72 5.30 -17.47 -0.09 1.63 15 6 N -0.87 -25.68 13.96 55.50 0.77 -24.91 15 7 Si 0.88 21.05 25.25 -169.99 -4.29 16.76 15 8 H -0.27 -6.04 6.59 56.52 0.37 -5.67 15 9 H -0.26 -6.31 7.11 56.52 0.40 -5.91 15 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 11 C 0.49 12.06 7.41 -10.98 -0.08 11.98 15 12 O -0.56 -15.63 16.18 5.54 0.09 -15.54 15 13 C -0.13 -2.41 4.81 -91.78 -0.44 -2.85 15 14 H 0.11 1.81 7.32 -51.93 -0.38 1.43 15 15 C -0.11 -1.73 10.23 -26.74 -0.27 -2.01 15 16 C -0.20 -3.37 5.05 -154.52 -0.78 -4.15 15 17 C -0.11 -1.77 10.16 -26.73 -0.27 -2.04 15 18 C -0.14 -1.78 10.53 -26.73 -0.28 -2.06 15 19 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 20 H 0.05 0.93 6.81 -51.93 -0.35 0.58 15 21 H 0.07 1.40 3.85 -51.93 -0.20 1.20 15 22 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 23 H 0.10 1.69 8.14 -51.93 -0.42 1.27 15 24 H 0.10 1.24 8.14 -51.93 -0.42 0.82 15 25 H 0.10 1.69 8.14 -51.93 -0.42 1.27 15 26 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 241.33 15.07 3.64 3.64 Total: -1.00 -32.76 241.33 -5.42 -38.17 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.48 Total: 1.14 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.85 Total: -7.05 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.47 Total: -37.13 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.54 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.29 Total: 16.76 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.76 -5.42 -38.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705148517.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.546 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds