Wall clock time and date at job start Mon Mar 30 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 O 1.42901 * 109.49598 * 265.46764 * 3 2 1 5 5 C 1.53031 * 109.49822 * 25.52808 * 3 2 1 6 6 C 1.53048 * 109.53937 * 58.59033 * 5 3 2 7 7 C 1.53194 * 109.31265 * 61.36103 * 6 5 3 8 8 N 1.46927 * 108.77310 * 305.37059 * 7 6 5 9 9 C 1.36942 * 120.63034 * 233.58656 * 8 7 6 10 10 H 1.08000 * 119.99738 * 27.68265 * 9 8 7 11 11 C 1.38808 * 120.00179 * 207.68995 * 9 8 7 12 12 N 1.31618 * 120.00133 * 17.36386 * 11 9 8 13 13 Si 1.86802 * 119.99831 * 197.36549 * 11 9 8 14 14 H 1.48497 * 109.47236 * 59.99587 * 13 11 9 15 15 H 1.48505 * 109.46820 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47134 * 299.99353 * 13 11 9 17 17 C 1.46925 * 118.74435 * 53.60762 * 8 7 6 18 18 H 4.38495 * 5.44148 * 180.02562 * 4 1 2 19 19 H 0.96702 * 113.99896 * 300.00420 * 4 3 2 20 20 H 1.09006 * 109.45983 * 178.60399 * 5 3 2 21 21 H 1.08995 * 109.46448 * 298.56908 * 5 3 2 22 22 H 1.08992 * 109.49962 * 181.31430 * 6 5 3 23 23 H 1.08999 * 109.49421 * 301.38233 * 6 5 3 24 24 H 1.08998 * 109.58500 * 65.14925 * 7 6 5 25 25 H 1.08990 * 109.58712 * 185.58462 * 7 6 5 26 26 H 0.97004 * 120.00023 * 180.02562 * 12 11 9 27 27 H 1.08997 * 109.58918 * 186.60042 * 17 8 7 28 28 H 1.09003 * 109.58424 * 66.17568 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 0.1073 1.3429 5 6 3.1574 -1.3008 -0.6217 6 6 2.6197 -1.4324 -2.0486 7 6 3.1302 -0.2602 -2.8924 8 7 2.7672 0.9970 -2.2241 9 6 2.0790 1.9713 -2.8968 10 1 1.4235 1.7041 -3.7124 11 6 2.2242 3.3023 -2.5305 12 7 3.2487 3.6737 -1.7924 13 14 0.9655 4.5662 -3.0849 14 1 -0.3734 4.1940 -2.5616 15 1 1.3454 5.9043 -2.5647 16 1 0.9236 4.6052 -4.5689 17 6 3.1568 1.1892 -0.8206 18 1 -1.0500 -0.0002 -0.0001 19 1 2.8374 0.9108 1.7990 20 1 4.2472 -1.2890 -0.6440 21 1 2.8157 -2.1469 -0.0255 22 1 2.9652 -2.3706 -2.4825 23 1 1.5300 -1.4199 -2.0292 24 1 4.2142 -0.3234 -2.9878 25 1 2.6716 -0.2943 -3.8806 26 1 3.3500 4.6038 -1.5361 27 1 2.7158 2.1112 -0.4419 28 1 4.2429 1.2441 -0.7471 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708100135.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:47 Heat of formation + Delta-G solvation = 23.929895 kcal Electronic energy + Delta-G solvation = -12705.306001 eV Core-core repulsion = 10530.472668 eV Total energy + Delta-G solvation = -2174.833334 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.54177 -35.30942 -33.01042 -31.79849 -30.06650 -28.71548 -25.33694 -22.47647 -22.16365 -20.00561 -17.75654 -16.68874 -15.99812 -14.96952 -14.30227 -14.02002 -13.74712 -13.27127 -12.47590 -12.09541 -12.01551 -11.59468 -11.07028 -10.76571 -10.56533 -10.32724 -10.23923 -10.10348 -9.84187 -9.74619 -9.72579 -9.12450 -8.51495 -6.71088 -5.82214 -3.24324 3.36554 3.42450 3.43338 3.44461 3.54320 4.46584 4.80172 4.94403 5.34352 5.52840 5.63794 5.71961 5.90275 6.12310 6.31464 6.40312 6.47822 6.55734 6.72411 6.80719 6.97448 7.15834 7.48378 7.76152 8.11624 8.30852 8.41163 9.15981 9.79684 10.35760 11.26406 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.038844 B = 0.014114 C = 0.013340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.664699 B = 1983.320816 C = 2098.522151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.163 4.163 3 C 0.205 3.795 4 O -0.560 6.560 5 C -0.090 4.090 6 C -0.135 4.135 7 C 0.142 3.858 8 N -0.584 5.584 9 C -0.250 4.250 10 H 0.066 0.934 11 C 0.003 3.997 12 N -0.904 5.904 13 Si 0.902 3.098 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.282 1.282 17 C 0.158 3.842 18 H 0.208 0.792 19 H 0.376 0.624 20 H 0.070 0.930 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.022 0.978 25 H 0.056 0.944 26 H 0.255 0.745 27 H 0.092 0.908 28 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -6.488 2.595 7.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.164 4.164 3 C 0.163 3.837 4 O -0.365 6.365 5 C -0.128 4.128 6 C -0.174 4.174 7 C 0.016 3.984 8 N -0.308 5.308 9 C -0.379 4.379 10 H 0.083 0.917 11 C -0.196 4.196 12 N -0.548 5.548 13 Si 0.731 3.269 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.208 1.208 17 C 0.031 3.969 18 H 0.225 0.775 19 H 0.224 0.776 20 H 0.089 0.911 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.707 -6.881 2.484 7.513 hybrid contribution -1.183 1.293 -0.096 1.755 sum -2.891 -5.588 2.388 6.730 Atomic orbital electron populations 1.24652 0.95679 1.02754 1.01180 1.23767 0.94863 0.98622 0.99111 1.19246 0.82202 0.99446 0.82762 1.86474 1.76542 1.46956 1.26538 1.21299 1.00754 0.94801 0.95929 1.22066 1.01183 0.99164 0.94975 1.20985 0.96653 0.85993 0.94783 1.43875 1.65323 1.14846 1.06709 1.19119 1.18126 0.85713 1.14964 0.91650 1.25017 0.97048 0.97066 1.00421 1.70007 1.27394 1.16385 1.41053 0.86375 0.81451 0.80608 0.78431 1.21036 1.21559 1.20788 1.21386 0.97317 0.94384 0.83827 0.77463 0.77642 0.91148 0.92667 0.92303 0.91987 0.96027 0.92507 0.93498 0.88963 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.27 19.25 29.55 0.57 -3.71 15 2 C -0.16 -3.41 10.47 -37.12 -0.39 -3.80 15 3 C 0.21 4.26 1.09 -93.29 -0.10 4.15 15 4 O -0.56 -10.66 12.95 -35.23 -0.46 -11.12 15 5 C -0.09 -1.68 5.06 -26.69 -0.13 -1.82 15 6 C -0.13 -2.46 5.84 -26.61 -0.16 -2.61 15 7 C 0.14 3.02 6.52 -3.71 -0.02 3.00 15 8 N -0.58 -14.78 2.69 -172.32 -0.46 -15.24 15 9 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 15 10 H 0.07 1.78 7.89 -52.49 -0.41 1.36 15 11 C 0.00 0.08 4.91 -17.43 -0.09 0.00 15 12 N -0.90 -26.13 11.19 55.49 0.62 -25.51 15 13 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 15 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 17 C 0.16 3.82 4.31 -3.71 -0.02 3.81 15 18 H 0.21 3.08 7.80 -54.09 -0.42 2.66 15 19 H 0.38 6.01 9.03 45.56 0.41 6.43 15 20 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 21 H 0.05 0.96 8.14 -51.93 -0.42 0.53 15 22 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 23 H 0.06 1.20 7.15 -51.93 -0.37 0.82 15 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 15 25 H 0.06 1.17 7.93 -51.93 -0.41 0.76 15 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 27 H 0.09 2.47 6.03 -51.93 -0.31 2.16 15 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 LS Contribution 239.62 15.07 3.61 3.61 Total: -1.00 -30.50 239.62 -4.97 -35.47 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -2.77 Total: 4.04 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -0.48 Total: -8.02 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.16 Total: -40.75 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.46 Total: -11.12 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.50 -4.97 -35.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708100135.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.400 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds