Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32991 * 119.99445 * 2 1 4 4 C 1.47103 * 120.00734 * 0.02562 * 3 2 1 5 5 O 1.21613 * 119.99620 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00414 * 179.97438 * 4 3 2 7 7 C 1.47067 * 136.05686 * 359.62098 * 6 4 3 8 8 C 1.53756 * 87.88535 * 152.96561 * 7 6 4 9 9 C 1.50705 * 114.08399 * 139.77917 * 8 7 6 10 10 H 1.07998 * 120.00000 * 266.55964 * 9 8 7 11 11 C 1.37872 * 119.99644 * 86.56255 * 9 8 7 12 12 N 1.31518 * 120.00544 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99771 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46999 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46988 * 119.99987 * 13 11 9 16 16 H 1.48494 * 109.47256 * 240.00014 * 13 11 9 17 17 C 1.47062 * 136.05651 * 179.97438 * 6 4 3 18 18 H 1.09001 * 109.46740 * 59.99860 * 1 2 3 19 19 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47161 * 299.99717 * 1 2 3 21 21 H 1.07995 * 120.00167 * 179.72471 * 2 1 3 22 22 H 1.08001 * 119.99931 * 179.97438 * 3 2 1 23 23 H 1.08994 * 113.46653 * 267.69972 * 7 6 4 24 24 H 1.08996 * 113.46465 * 38.13952 * 7 6 4 25 25 H 1.08999 * 114.57433 * 272.66137 * 8 7 6 26 26 H 0.96991 * 120.00236 * 180.02562 * 12 11 9 27 27 H 1.08997 * 113.46663 * 321.86013 * 17 6 4 28 28 H 1.09000 * 113.47168 * 92.29724 * 17 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4364 2.4258 0.0006 5 8 0.2203 2.4257 0.0006 6 7 2.1103 3.5930 0.0011 7 6 3.5235 3.9998 0.0080 8 6 3.0944 5.2974 -0.6965 9 6 3.8060 6.5302 -0.2016 10 1 3.3651 7.1308 0.5803 11 6 5.0196 6.8913 -0.7470 12 7 5.5567 6.1597 -1.6988 13 14 5.9013 8.4199 -0.1340 14 1 5.0936 9.0625 0.9336 15 1 7.2293 8.0400 0.4115 16 1 6.0823 9.3717 -1.2593 17 6 1.7558 5.0203 0.0013 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 2.0471 -0.9352 0.0045 22 1 3.2519 1.1519 0.0004 23 1 3.9238 4.1613 1.0089 24 1 4.1616 3.3625 -0.6040 25 1 3.0537 5.2307 -1.7837 26 1 6.4107 6.4135 -2.0822 27 1 0.8883 5.2521 -0.6165 28 1 1.6897 5.4511 1.0004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855478143.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = 12.931205 kcal Electronic energy + Delta-G solvation = -11912.650923 eV Core-core repulsion = 9737.340650 eV Total energy + Delta-G solvation = -2175.310273 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.46460 -37.36065 -33.71207 -32.68942 -29.60693 -27.16384 -25.02133 -24.93207 -21.62629 -19.63321 -17.66939 -16.90294 -16.36364 -14.83600 -14.62345 -14.53232 -14.14464 -13.52248 -12.47287 -12.34520 -12.25783 -11.87074 -11.52892 -11.42631 -11.25594 -10.95370 -10.76192 -10.32795 -9.49698 -9.22079 -9.16505 -8.85681 -8.57773 -7.77424 -6.18484 -4.24017 1.73221 3.22599 3.31545 3.35098 3.68634 3.83953 4.33539 5.01402 5.11914 5.22631 5.51073 5.82926 6.02025 6.02907 6.17981 6.21516 6.35767 6.46340 6.54068 6.60045 6.67118 6.76551 6.93781 7.56196 7.79589 8.18514 8.57759 8.80289 8.84289 9.42863 10.91352 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.090393 B = 0.007541 C = 0.007204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.683393 B = 3712.354617 C = 3885.824169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.207 4.207 4 C 0.557 3.443 5 O -0.565 6.565 6 N -0.640 5.640 7 C 0.098 3.902 8 C 0.034 3.966 9 C -0.517 4.517 10 H 0.064 0.936 11 C 0.068 3.932 12 N -0.886 5.886 13 Si 0.896 3.104 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.099 3.901 18 H 0.079 0.921 19 H 0.045 0.955 20 H 0.078 0.922 21 H 0.120 0.880 22 H 0.123 0.877 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.263 0.737 27 H 0.056 0.944 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -7.532 2.834 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.104 4.104 3 C -0.227 4.227 4 C 0.349 3.651 5 O -0.448 6.448 6 N -0.372 5.372 7 C -0.024 4.024 8 C 0.014 3.986 9 C -0.555 4.555 10 H 0.082 0.918 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.023 4.023 18 H 0.098 0.902 19 H 0.064 0.936 20 H 0.097 0.903 21 H 0.138 0.862 22 H 0.141 0.859 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.543 -7.725 2.713 8.921 hybrid contribution 0.865 0.688 0.334 1.155 sum -2.678 -7.037 3.047 8.122 Atomic orbital electron populations 1.20995 0.92085 1.00198 1.04252 1.23633 0.97231 0.96881 0.92621 1.22682 1.00400 0.92638 1.07009 1.18156 0.86599 0.83196 0.77108 1.90702 1.13727 1.87368 1.53043 1.49943 1.11674 1.05421 1.70195 1.23651 0.80710 0.97393 1.00677 1.20402 0.89178 0.92439 0.96546 1.20965 1.04548 1.09061 1.20903 0.91775 1.25036 0.97360 0.96757 0.94421 1.69963 1.18183 1.38501 1.25658 0.86478 0.79529 0.82827 0.78853 1.19555 1.20903 1.20865 1.23317 1.00717 0.77757 1.00495 0.90245 0.93579 0.90328 0.86196 0.85942 0.90832 0.92218 0.91326 0.92690 0.92504 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 8.45 36.01 0.30 -1.36 15 2 C -0.08 -1.15 10.35 -36.12 -0.37 -1.52 15 3 C -0.21 -3.38 9.86 -37.81 -0.37 -3.76 15 4 C 0.56 11.37 7.98 -12.66 -0.10 11.27 15 5 O -0.57 -12.58 13.84 5.27 0.07 -12.51 15 6 N -0.64 -13.56 3.69 -186.49 -0.69 -14.25 15 7 C 0.10 2.11 7.91 -8.37 -0.07 2.05 15 8 C 0.03 0.80 3.80 -91.13 -0.35 0.45 15 9 C -0.52 -13.25 8.82 -34.44 -0.30 -13.55 15 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 15 11 C 0.07 1.77 5.46 -17.82 -0.10 1.67 15 12 N -0.89 -24.22 13.26 55.43 0.74 -23.48 15 13 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 15 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 17 C 0.10 2.14 8.17 -8.52 -0.07 2.07 15 18 H 0.08 1.26 7.22 -51.93 -0.37 0.88 15 19 H 0.05 0.50 8.14 -51.93 -0.42 0.08 15 20 H 0.08 1.23 7.22 -51.93 -0.37 0.85 15 21 H 0.12 1.24 8.06 -52.49 -0.42 0.81 15 22 H 0.12 1.83 7.98 -52.49 -0.42 1.41 15 23 H 0.07 1.55 8.10 -51.93 -0.42 1.13 15 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.07 1.78 8.11 -51.93 -0.42 1.36 15 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 15 28 H 0.07 1.49 8.10 -51.93 -0.42 1.07 15 LS Contribution 247.78 15.07 3.73 3.73 Total: -1.00 -28.42 247.78 -6.26 -34.68 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.67 Total: -0.55 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.43 Total: -2.69 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.05 Total: -37.73 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.42 -6.26 -34.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855478143.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.608 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds