Wall clock time and date at job start Mon Mar 30 2020 02:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86808 * 119.99804 * 2 1 4 4 H 1.48503 * 109.46902 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46705 * 119.99837 * 3 2 1 6 6 H 1.48500 * 109.47030 * 239.99992 * 3 2 1 7 7 C 1.38814 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00300 * 204.33094 * 7 2 1 9 9 N 1.36939 * 119.99508 * 24.33331 * 7 2 1 10 10 C 1.45296 * 121.97764 * 28.86186 * 9 7 2 11 11 C 1.50468 * 111.35799 * 122.01756 * 10 9 7 12 12 C 1.49762 * 114.59884 * 82.07561 * 11 10 9 13 13 C 1.52174 * 112.58958 * 274.62346 * 12 11 10 14 14 C 1.51765 * 112.13870 * 18.73323 * 13 12 11 15 15 C 1.52442 * 111.23432 * 300.66793 * 14 13 12 16 16 C 1.50960 * 112.74908 * 35.10278 * 15 14 13 17 17 C 1.48708 * 121.96722 * 209.15392 * 9 7 2 18 18 H 0.96996 * 119.99701 * 185.77165 * 1 2 3 19 19 H 1.08998 * 108.98707 * 243.69869 * 10 9 7 20 20 H 1.09003 * 108.99088 * 2.43705 * 10 9 7 21 21 H 1.08999 * 106.83279 * 200.29643 * 11 10 9 22 22 H 1.09004 * 108.86360 * 153.82550 * 12 11 10 23 23 H 1.08998 * 108.77574 * 35.37011 * 12 11 10 24 24 H 1.08990 * 108.94809 * 258.04963 * 13 12 11 25 25 H 1.08997 * 108.87507 * 139.36813 * 13 12 11 26 26 H 1.09001 * 108.36456 * 181.68029 * 14 13 12 27 27 H 1.09002 * 108.97997 * 155.54148 * 15 14 13 28 28 H 1.08997 * 108.97948 * 274.24565 * 15 14 13 29 29 H 1.08993 * 109.22724 * 264.68277 * 16 15 14 30 30 H 1.09006 * 109.36099 * 145.21272 * 16 15 14 31 31 H 1.08990 * 110.10339 * 10.51494 * 17 9 7 32 32 H 1.09001 * 110.09652 * 132.17488 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1039 1.6965 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0184 -1.2435 0.3859 9 7 1.4169 -2.3356 -0.4876 10 6 0.4025 -2.2865 -1.5267 11 6 0.8101 -3.0941 -2.7290 12 6 0.5447 -4.5634 -2.6123 13 6 1.6701 -5.3065 -1.9073 14 6 2.5546 -4.3732 -1.1011 15 6 3.1877 -3.3082 -1.9892 16 6 2.2753 -2.8614 -3.1058 17 6 1.7682 -3.6889 0.0189 18 1 -0.4849 -0.8358 0.0845 19 1 -0.5372 -2.6634 -1.1229 20 1 0.2632 -1.2512 -1.8379 21 1 0.2180 -2.7307 -3.5689 22 1 0.4199 -4.9796 -3.6120 23 1 -0.3790 -4.7097 -2.0524 24 1 2.2801 -5.8154 -2.6535 25 1 1.2370 -6.0497 -1.2380 26 1 3.3530 -4.9618 -0.6492 27 1 3.4362 -2.4397 -1.3791 28 1 4.1039 -3.7078 -2.4238 29 1 2.5082 -3.4273 -4.0077 30 1 2.4322 -1.7999 -3.2979 31 1 2.3856 -3.6055 0.9132 32 1 0.8620 -4.2532 0.2391 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031484416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:36 Heat of formation + Delta-G solvation = 9.825214 kcal Electronic energy + Delta-G solvation = -13475.890162 eV Core-core repulsion = 11436.278298 eV Total energy + Delta-G solvation = -2039.611864 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.55657 -34.28277 -32.17457 -30.61677 -30.20996 -25.88799 -24.35235 -22.58202 -22.09908 -19.22777 -17.42525 -16.81471 -15.43805 -15.03067 -14.15028 -13.83000 -13.29659 -13.19210 -12.25260 -11.97596 -11.74427 -11.49816 -11.42296 -11.08685 -10.69330 -10.53484 -10.28669 -10.02624 -9.70711 -9.50380 -9.28058 -9.22756 -9.13464 -8.28235 -6.75178 -6.00198 -3.18393 3.51594 3.54794 3.72612 4.62972 5.19240 5.32629 5.39806 5.45886 5.55509 5.87691 5.90525 5.99415 6.12677 6.16247 6.22248 6.26040 6.52559 6.55225 6.64561 6.68497 6.72303 6.88012 6.97331 7.05532 7.10886 7.25277 7.34693 7.44849 8.04797 8.64722 9.17452 9.91378 10.43292 11.26675 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.052012 B = 0.013678 C = 0.013336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.211321 B = 2046.597983 C = 2099.139969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.025 4.025 3 Si 1.063 2.937 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.338 4.338 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.157 3.843 11 C -0.102 4.102 12 C -0.103 4.103 13 C -0.102 4.102 14 C -0.102 4.102 15 C -0.098 4.098 16 C -0.086 4.086 17 C 0.140 3.860 18 H 0.269 0.731 19 H 0.011 0.989 20 H 0.075 0.925 21 H 0.044 0.956 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 -7.302 -4.417 9.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.227 4.227 3 Si 0.892 3.108 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.467 4.467 8 H 0.073 0.927 9 N -0.314 5.314 10 C 0.030 3.970 11 C -0.122 4.122 12 C -0.141 4.141 13 C -0.140 4.140 14 C -0.122 4.122 15 C -0.135 4.135 16 C -0.124 4.124 17 C 0.014 3.986 18 H 0.080 0.920 19 H 0.029 0.971 20 H 0.093 0.907 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.013 -5.587 -4.467 7.762 hybrid contribution 0.164 -1.813 0.027 1.821 sum 3.178 -7.400 -4.440 9.196 Atomic orbital electron populations 1.70766 1.06635 1.30329 1.47981 1.25833 0.96556 1.01428 0.98903 0.83558 0.74802 0.76217 0.76173 1.21170 1.22035 1.22062 1.19833 0.96798 0.87901 1.42127 0.92724 1.44142 1.46912 1.01223 1.39084 1.20119 0.90362 0.99283 0.87239 1.20611 0.96741 0.94964 0.99917 1.20747 0.98242 0.96035 0.99053 1.21054 0.96977 0.97477 0.98442 1.21359 0.97422 0.96115 0.97339 1.20897 0.95806 0.99699 0.97134 1.20832 0.94885 1.00151 0.96521 1.21464 0.96072 0.87232 0.93827 0.92046 0.97093 0.90680 0.93797 0.93517 0.93019 0.93495 0.93230 0.93450 0.89224 0.95571 0.94627 0.92682 0.92903 0.95454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.62 12.40 55.49 0.69 -26.93 16 2 C -0.03 -0.71 4.75 -17.43 -0.08 -0.79 16 3 Si 1.06 25.34 29.98 -169.99 -5.10 20.24 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.34 -9.31 8.15 -15.06 -0.12 -9.43 16 8 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 9 N -0.59 -14.71 1.59 -173.89 -0.28 -14.99 16 10 C 0.16 3.73 3.96 -5.95 -0.02 3.71 16 11 C -0.10 -2.01 2.40 -93.45 -0.22 -2.24 16 12 C -0.10 -1.77 5.40 -28.76 -0.16 -1.92 16 13 C -0.10 -1.67 5.16 -27.78 -0.14 -1.82 16 14 C -0.10 -1.89 2.86 -91.52 -0.26 -2.15 16 15 C -0.10 -1.92 5.12 -28.04 -0.14 -2.06 16 16 C -0.09 -1.67 5.31 -27.72 -0.15 -1.82 16 17 C 0.14 3.01 6.01 -2.82 -0.02 2.99 16 18 H 0.27 8.18 6.80 -40.82 -0.28 7.90 16 19 H 0.01 0.27 7.71 -51.93 -0.40 -0.13 16 20 H 0.07 2.01 6.18 -51.93 -0.32 1.69 16 21 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.89 7.81 -51.93 -0.41 0.48 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 2.04 5.57 -51.93 -0.29 1.75 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 1.14 8.03 -51.93 -0.42 0.72 16 32 H 0.03 0.58 7.82 -51.93 -0.41 0.17 16 LS Contribution 237.18 15.07 3.57 3.57 Total: -1.00 -28.97 237.18 -7.53 -36.51 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.10 Total: -2.87 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -1.32 Total: -15.53 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.41 Total: -41.91 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.10 Total: 20.24 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.97 -7.53 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031484416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.330 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds