Wall clock time and date at job start Mon Mar 30 2020 02:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86808 * 119.99804 * 2 1 4 4 H 1.48503 * 109.46902 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46705 * 119.99837 * 3 2 1 6 6 H 1.48500 * 109.47030 * 239.99992 * 3 2 1 7 7 C 1.38814 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00300 * 204.33094 * 7 2 1 9 9 N 1.36939 * 119.99508 * 24.33331 * 7 2 1 10 10 C 1.45296 * 121.97764 * 28.86186 * 9 7 2 11 11 C 1.50468 * 111.35799 * 122.01756 * 10 9 7 12 12 C 1.49762 * 114.59884 * 82.07561 * 11 10 9 13 13 C 1.52174 * 112.58958 * 274.62346 * 12 11 10 14 14 C 1.51765 * 112.13870 * 18.73323 * 13 12 11 15 15 C 1.52442 * 111.23432 * 300.66793 * 14 13 12 16 16 C 1.50960 * 112.74908 * 35.10278 * 15 14 13 17 17 C 1.48708 * 121.96722 * 209.15392 * 9 7 2 18 18 H 0.96996 * 119.99701 * 185.77165 * 1 2 3 19 19 H 1.08998 * 108.98707 * 243.69869 * 10 9 7 20 20 H 1.09003 * 108.99088 * 2.43705 * 10 9 7 21 21 H 1.08999 * 106.83279 * 200.29643 * 11 10 9 22 22 H 1.09004 * 108.86360 * 153.82550 * 12 11 10 23 23 H 1.08998 * 108.77574 * 35.37011 * 12 11 10 24 24 H 1.08990 * 108.94809 * 258.04963 * 13 12 11 25 25 H 1.08997 * 108.87507 * 139.36813 * 13 12 11 26 26 H 1.09001 * 108.36456 * 181.68029 * 14 13 12 27 27 H 1.09002 * 108.97997 * 155.54148 * 15 14 13 28 28 H 1.08997 * 108.97948 * 274.24565 * 15 14 13 29 29 H 1.08993 * 109.22724 * 264.68277 * 16 15 14 30 30 H 1.09006 * 109.36099 * 145.21272 * 16 15 14 31 31 H 1.08990 * 110.10339 * 10.51494 * 17 9 7 32 32 H 1.09001 * 110.09652 * 132.17488 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1039 1.6965 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0184 -1.2435 0.3859 9 7 1.4169 -2.3356 -0.4876 10 6 0.4025 -2.2865 -1.5267 11 6 0.8101 -3.0941 -2.7290 12 6 0.5447 -4.5634 -2.6123 13 6 1.6701 -5.3065 -1.9073 14 6 2.5546 -4.3732 -1.1011 15 6 3.1877 -3.3082 -1.9892 16 6 2.2753 -2.8614 -3.1058 17 6 1.7682 -3.6889 0.0189 18 1 -0.4849 -0.8358 0.0845 19 1 -0.5372 -2.6634 -1.1229 20 1 0.2632 -1.2512 -1.8379 21 1 0.2180 -2.7307 -3.5689 22 1 0.4199 -4.9796 -3.6120 23 1 -0.3790 -4.7097 -2.0524 24 1 2.2801 -5.8154 -2.6535 25 1 1.2370 -6.0497 -1.2380 26 1 3.3530 -4.9618 -0.6492 27 1 3.4362 -2.4397 -1.3791 28 1 4.1039 -3.7078 -2.4238 29 1 2.5082 -3.4273 -4.0077 30 1 2.4322 -1.7999 -3.2979 31 1 2.3856 -3.6055 0.9132 32 1 0.8620 -4.2532 0.2391 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031484416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:36 Heat of formation + Delta-G solvation = -5.985303 kcal Electronic energy + Delta-G solvation = -13476.575757 eV Core-core repulsion = 11436.278298 eV Total energy + Delta-G solvation = -2040.297459 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.16899 -36.20662 -33.80145 -32.54762 -31.72431 -27.84278 -26.04421 -24.47381 -23.55488 -21.01300 -19.41662 -18.36616 -17.06466 -16.70568 -15.76577 -15.62590 -15.18140 -15.03726 -13.88947 -13.51174 -13.40214 -13.30125 -12.94250 -12.75522 -12.52166 -12.20967 -11.92968 -11.89202 -11.47207 -11.35560 -10.85684 -10.78015 -10.71435 -10.37854 -8.82894 -8.19154 -5.36543 1.56763 1.64397 1.82659 2.66101 3.24871 3.54919 3.87350 3.95870 3.97018 4.35518 4.38939 4.49493 4.53457 4.66156 4.73023 4.87614 4.90562 4.95074 5.04485 5.14103 5.20321 5.27905 5.35850 5.45568 5.53512 5.65870 5.69452 5.82657 5.90459 6.42843 7.09103 7.82814 8.33686 9.03631 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.052012 B = 0.013678 C = 0.013336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.211321 B = 2046.597983 C = 2099.139969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.079 4.079 3 Si 1.111 2.889 4 H -0.294 1.294 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.334 4.334 8 H 0.049 0.951 9 N -0.606 5.606 10 C 0.167 3.833 11 C -0.101 4.101 12 C -0.101 4.101 13 C -0.099 4.099 14 C -0.096 4.096 15 C -0.097 4.097 16 C -0.084 4.084 17 C 0.136 3.864 18 H 0.252 0.748 19 H -0.005 1.005 20 H 0.034 0.966 21 H 0.050 0.950 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -9.025 -5.515 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.275 4.275 3 Si 0.936 3.064 4 H -0.220 1.220 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.463 4.463 8 H 0.067 0.933 9 N -0.329 5.329 10 C 0.040 3.960 11 C -0.121 4.121 12 C -0.139 4.139 13 C -0.136 4.136 14 C -0.116 4.116 15 C -0.134 4.134 16 C -0.122 4.122 17 C 0.011 3.989 18 H 0.062 0.938 19 H 0.013 0.987 20 H 0.053 0.947 21 H 0.069 0.931 22 H 0.095 0.905 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.291 -7.351 -5.566 10.170 hybrid contribution -0.218 -1.323 0.396 1.398 sum 4.073 -8.674 -5.170 10.888 Atomic orbital electron populations 1.70889 1.07635 1.29282 1.51084 1.27129 0.96600 1.04758 0.99021 0.82908 0.73882 0.72380 0.77267 1.21976 1.20120 1.20713 1.20023 0.96442 0.89083 1.40788 0.93329 1.44314 1.46871 1.01951 1.39784 1.19980 0.89715 0.97735 0.88586 1.20494 0.97337 0.96627 0.97620 1.20733 0.98429 0.93766 1.00952 1.21051 0.96561 0.97027 0.98998 1.21259 0.97939 0.96110 0.96316 1.20843 0.97071 0.98680 0.96842 1.20828 0.94367 0.99150 0.97862 1.21630 0.96516 0.85800 0.94982 0.93796 0.98746 0.94702 0.93148 0.90514 0.93566 0.90842 0.91685 0.91321 0.93163 0.93001 0.91323 0.95241 0.93795 0.95122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.10 12.40 21.65 0.27 -58.83 16 2 C -0.08 -4.59 4.75 84.86 0.40 -4.18 16 3 Si 1.11 52.02 29.98 68.60 2.06 54.08 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.33 -18.79 8.15 84.03 0.68 -18.11 16 8 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 9 N -0.61 -30.62 1.59 -704.06 -1.12 -31.75 16 10 C 0.17 8.10 3.96 85.79 0.34 8.44 16 11 C -0.10 -3.83 2.40 -12.63 -0.03 -3.86 16 12 C -0.10 -3.12 5.40 29.28 0.16 -2.96 16 13 C -0.10 -2.80 5.16 29.92 0.15 -2.65 16 14 C -0.10 -3.28 2.86 -11.38 -0.03 -3.31 16 15 C -0.10 -3.57 5.12 29.75 0.15 -3.42 16 16 C -0.08 -3.09 5.31 29.96 0.16 -2.94 16 17 C 0.14 5.73 6.01 85.96 0.52 6.24 16 18 H 0.25 16.11 6.80 -92.71 -0.63 15.48 16 19 H -0.01 -0.27 7.71 -2.39 -0.02 -0.29 16 20 H 0.03 1.95 6.18 -2.39 -0.01 1.93 16 21 H 0.05 1.84 8.09 -2.39 -0.02 1.82 16 22 H 0.08 1.95 8.14 -2.38 -0.02 1.94 16 23 H 0.05 1.47 7.81 -2.39 -0.02 1.45 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 2.26 5.57 -2.39 -0.01 2.24 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.04 1.88 8.03 -2.39 -0.02 1.86 16 32 H 0.03 1.26 7.82 -2.39 -0.02 1.25 16 Total: -1.00 -63.77 237.18 4.92 -58.86 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.21 Total: 4.39 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 2.51 Total: -26.74 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -0.85 Total: -90.58 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.06 Total: 54.08 kcal Total: -63.77 4.92 -58.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031484416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.871 kcal (2) G-P(sol) polarization free energy of solvation -63.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds