Wall clock time and date at job start Mon Mar 30 2020 02:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00372 * 2 1 4 4 H 1.48497 * 109.47063 * 270.00123 * 3 2 1 5 5 H 1.48506 * 109.46840 * 29.99471 * 3 2 1 6 6 H 1.48496 * 109.47755 * 149.99833 * 3 2 1 7 7 C 1.37877 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00220 * 0.27864 * 7 2 1 10 10 N 1.46900 * 109.47380 * 179.72477 * 9 7 2 11 11 C 1.46893 * 111.00015 * 180.89344 * 10 9 7 12 12 C 1.52999 * 109.47450 * 131.33364 * 11 10 9 13 13 C 1.52999 * 117.49637 * 8.74527 * 12 11 10 14 14 C 1.53001 * 117.49675 * 300.08468 * 12 11 10 15 15 C 1.53006 * 109.46963 * 251.33102 * 11 10 9 16 16 C 1.52999 * 117.49703 * 134.19973 * 15 11 10 17 17 C 1.53001 * 117.49547 * 65.54320 * 15 11 10 18 18 H 0.97004 * 119.99529 * 0.02562 * 1 2 3 19 19 H 1.09006 * 109.47138 * 299.72451 * 9 7 2 20 20 H 1.09003 * 109.46862 * 59.72218 * 9 7 2 21 21 H 1.00898 * 111.00269 * 56.93375 * 10 9 7 22 22 H 1.09004 * 109.47534 * 11.33016 * 11 10 9 23 23 H 1.08999 * 115.55350 * 154.41223 * 12 11 10 24 24 H 1.08998 * 117.50006 * 0.02562 * 13 12 11 25 25 H 1.09000 * 117.49843 * 145.02473 * 13 12 11 26 26 H 1.09001 * 117.50035 * 214.97535 * 14 12 11 27 27 H 1.09000 * 117.50021 * 0.02562 * 14 12 11 28 28 H 1.08991 * 115.54951 * 279.86833 * 15 11 10 29 29 H 1.09002 * 117.49868 * 359.97438 * 16 15 11 30 30 H 1.08998 * 117.49982 * 145.02189 * 16 15 11 31 31 H 1.08999 * 117.49573 * 214.98035 * 17 15 11 32 32 H 1.08997 * 117.50051 * 359.97438 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4991 -0.0052 10 7 2.2055 -3.6157 -0.0101 11 6 1.5054 -4.9068 -0.0372 12 6 2.1125 -5.7936 -1.1261 13 6 3.3938 -5.3033 -1.8034 14 6 2.0664 -5.2765 -2.5654 15 6 1.6519 -5.5950 1.3215 16 6 0.3952 -6.2093 1.9414 17 6 0.9891 -4.9260 2.5274 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5608 0.8845 20 1 0.6243 -2.5529 -0.8955 21 1 2.8311 -3.5601 0.7796 22 1 0.4488 -4.7428 -0.2493 23 1 2.0032 -6.8672 -0.9733 24 1 3.8044 -4.3493 -1.4730 25 1 4.1272 -6.0545 -2.0966 26 1 1.9272 -6.0101 -3.3595 27 1 1.6039 -4.3045 -2.7364 28 1 2.5983 -6.1092 1.4883 29 1 -0.5360 -6.1228 1.3815 30 1 0.5150 -7.1275 2.5164 31 1 1.4995 -5.0004 3.4876 32 1 0.4491 -3.9954 2.3529 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037466190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:51 Heat of formation + Delta-G solvation = 42.007006 kcal Electronic energy + Delta-G solvation = -12364.998807 eV Core-core repulsion = 10326.782450 eV Total energy + Delta-G solvation = -2038.216357 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.46882 -35.83573 -33.86465 -31.92574 -27.71262 -25.00118 -22.18828 -21.89877 -21.31085 -20.73470 -19.25598 -16.30684 -15.96028 -14.84570 -14.60278 -14.23030 -13.74890 -12.86134 -12.79987 -12.20942 -11.39624 -11.25879 -11.18979 -11.07303 -10.81117 -10.70550 -10.63924 -10.19443 -10.09469 -9.69881 -9.54578 -9.27796 -9.09964 -8.46860 -7.19185 -6.01620 -4.03120 3.32944 3.38772 3.42464 4.10073 4.38091 4.45938 4.96979 5.16907 5.24058 5.34651 5.47075 5.52603 5.62138 5.65444 5.81351 5.92184 6.18885 6.21148 6.23506 6.30727 6.43038 6.52369 6.65071 6.78837 7.00941 7.31381 7.47927 7.82002 8.16683 8.46241 8.66618 9.06721 9.61773 11.09313 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.034123 B = 0.010134 C = 0.008575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.358186 B = 2762.293610 C = 3264.672472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.196 3.804 10 N -0.678 5.678 11 C 0.142 3.858 12 C -0.145 4.145 13 C -0.163 4.163 14 C -0.177 4.177 15 C -0.164 4.164 16 C -0.182 4.182 17 C -0.179 4.179 18 H 0.261 0.739 19 H -0.013 1.013 20 H 0.024 0.976 21 H 0.332 0.668 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 -10.594 1.065 10.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.308 5.308 11 C 0.032 3.968 12 C -0.164 4.164 13 C -0.201 4.201 14 C -0.214 4.214 15 C -0.183 4.183 16 C -0.220 4.220 17 C -0.216 4.216 18 H 0.070 0.930 19 H 0.005 0.995 20 H 0.043 0.957 21 H 0.149 0.851 22 H 0.082 0.918 23 H 0.109 0.891 24 H 0.134 0.866 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.667 -10.421 0.374 10.763 hybrid contribution -0.022 0.828 0.916 1.235 sum 2.644 -9.593 1.290 10.034 Atomic orbital electron populations 1.69964 1.06057 1.26695 1.51080 1.24979 0.94849 0.99301 0.95439 0.86511 0.79708 0.83153 0.78092 1.20674 1.21368 1.19873 1.21193 0.93482 0.90296 1.50050 0.92048 1.19631 0.90549 0.87430 0.95482 1.60705 1.21274 1.00722 1.48054 1.20584 0.97079 0.89746 0.89439 1.22304 1.02909 0.97612 0.93587 1.22875 0.90164 1.03561 1.03451 1.22798 1.02437 1.02545 0.93573 1.22923 0.96648 1.03663 0.95106 1.22941 0.97667 0.96883 1.04501 1.22981 1.04341 0.97197 0.97094 0.92982 0.99550 0.95746 0.85099 0.91778 0.89099 0.86583 0.90929 0.90409 0.88490 0.88150 0.89048 0.89482 0.89275 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.42 9.32 -34.44 -0.32 -14.74 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.20 5.06 5.13 -4.98 -0.03 5.04 16 10 N -0.68 -14.23 4.55 -107.99 -0.49 -14.72 16 11 C 0.14 2.55 2.69 -67.71 -0.18 2.37 16 12 C -0.15 -2.34 5.70 -90.62 -0.52 -2.85 16 13 C -0.16 -2.62 9.85 -26.69 -0.26 -2.89 16 14 C -0.18 -2.89 10.18 -26.69 -0.27 -3.17 16 15 C -0.16 -2.54 4.81 -90.62 -0.44 -2.98 16 16 C -0.18 -2.55 10.18 -26.69 -0.27 -2.82 16 17 C -0.18 -2.81 10.22 -26.69 -0.27 -3.09 16 18 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 19 H -0.01 -0.36 6.86 -51.93 -0.36 -0.72 16 20 H 0.02 0.69 8.12 -51.93 -0.42 0.27 16 21 H 0.33 6.84 8.17 -39.29 -0.32 6.51 16 22 H 0.06 1.27 7.37 -51.93 -0.38 0.89 16 23 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 24 H 0.12 2.11 6.95 -51.93 -0.36 1.75 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 28 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.10 1.86 6.86 -51.93 -0.36 1.51 16 LS Contribution 267.74 15.07 4.03 4.03 Total: -1.00 -28.69 267.74 -8.52 -37.21 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.12 Total: 6.47 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -2.66 Total: -23.63 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.24 Total: -40.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.69 -8.52 -37.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037466190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.217 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds