Wall clock time and date at job start Mon Mar 30 2020 02:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47028 * 2 1 4 4 N 1.46905 * 109.47234 * 239.99807 * 2 1 3 5 5 C 1.46904 * 110.99869 * 84.99851 * 4 2 1 6 6 C 1.50697 * 109.46838 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00086 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99638 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00238 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99834 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46904 * 60.00108 * 10 8 6 12 12 H 1.48499 * 109.47116 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47047 * 300.00147 * 10 8 6 14 14 C 1.50696 * 109.47214 * 119.99863 * 2 1 3 15 15 C 1.39870 * 125.89765 * 275.00259 * 14 2 1 16 16 C 1.35315 * 107.92205 * 179.97438 * 15 14 2 17 17 N 1.34948 * 107.74520 * 0.02562 * 16 15 14 18 18 H 0.96997 * 126.03916 * 180.02562 * 17 16 15 19 19 N 1.30839 * 125.90371 * 94.95819 * 14 2 1 20 20 H 1.08993 * 109.47357 * 300.00369 * 1 2 3 21 21 H 1.09002 * 109.47288 * 60.00425 * 1 2 3 22 22 H 1.08998 * 109.47028 * 180.02562 * 1 2 3 23 23 H 1.00900 * 110.99584 * 321.04514 * 4 2 1 24 24 H 1.08996 * 109.47066 * 300.00355 * 5 4 2 25 25 H 1.08999 * 109.46680 * 60.00261 * 5 4 2 26 26 H 0.97002 * 119.99713 * 180.02562 * 9 8 6 27 27 H 1.08001 * 126.04288 * 359.94312 * 15 14 2 28 28 H 1.08007 * 126.13167 * 179.73081 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5874 -0.5219 -3.5560 7 1 2.8363 -1.5700 -3.4798 8 6 2.7315 0.1351 -4.7596 9 7 2.4289 1.4116 -4.8523 10 14 3.3580 -0.7875 -6.2582 11 1 2.4362 -1.9092 -6.5699 12 1 3.4225 0.1378 -7.4179 13 1 4.7139 -1.3243 -5.9778 14 6 2.0324 -0.7104 1.2304 15 6 2.2126 -0.1359 2.4929 16 6 2.6754 -1.0970 3.3255 17 7 2.7848 -2.2390 2.6149 18 1 3.0920 -3.0945 2.9533 19 7 2.3745 -1.9712 1.3026 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.4496 -1.4980 -1.4100 24 1 1.0871 0.6162 -2.5525 25 1 2.7589 1.0461 -2.1182 26 1 2.5299 1.8737 -5.6992 27 1 2.0174 0.8931 2.7566 28 1 2.9188 -0.9714 4.3703 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037906971.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:25 Heat of formation + Delta-G solvation = 68.531259 kcal Electronic energy + Delta-G solvation = -11811.269621 eV Core-core repulsion = 9670.663099 eV Total energy + Delta-G solvation = -2140.606522 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.80897 -36.14992 -32.84392 -31.03752 -29.65575 -28.96590 -25.89621 -23.30584 -21.71616 -20.63487 -18.99994 -17.87960 -16.29002 -14.79522 -14.47794 -14.14266 -13.79441 -13.45935 -13.27011 -12.79293 -12.24082 -11.84684 -11.49085 -11.20986 -10.81347 -10.64922 -10.60117 -10.24488 -9.81882 -9.16708 -8.98626 -8.46448 -8.40920 -7.16561 -5.96749 -3.97722 2.20158 3.14185 3.18476 3.38814 3.41882 3.45972 4.48898 4.91846 5.09806 5.33330 5.39207 5.67927 5.76826 5.84598 5.98583 6.15018 6.31980 6.41172 6.55783 6.95291 7.32349 7.50996 7.54084 7.85567 8.07346 8.22135 8.51200 8.71475 9.11795 9.66666 11.14385 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.062233 B = 0.007518 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.815300 B = 3723.624244 C = 3965.334751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.157 3.843 3 H 0.090 0.910 4 N -0.677 5.677 5 C 0.194 3.806 6 C -0.512 4.512 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.101 3.899 15 C -0.271 4.271 16 C 0.044 3.956 17 N -0.491 5.491 18 H 0.433 0.567 19 N -0.267 5.267 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.334 0.666 24 H -0.011 1.011 25 H 0.028 0.972 26 H 0.261 0.739 27 H 0.143 0.857 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -3.239 14.525 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.043 3.957 3 H 0.108 0.892 4 N -0.307 5.307 5 C 0.067 3.933 6 C -0.550 4.550 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.727 3.273 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.068 4.068 15 C -0.302 4.302 16 C -0.103 4.103 17 N -0.198 5.198 18 H 0.276 0.724 19 N -0.090 5.090 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.151 0.849 24 H 0.007 0.993 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.161 0.839 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.085 -4.080 13.908 14.534 hybrid contribution -0.425 0.086 -0.277 0.515 sum -1.511 -3.993 13.631 14.284 Atomic orbital electron populations 1.22431 0.96709 1.01925 1.02036 1.19906 0.91913 0.96555 0.87288 0.89175 1.60607 1.55615 1.10281 1.04192 1.19602 0.95325 0.91795 0.86547 1.21163 1.43356 0.96933 0.93567 0.92018 1.24972 0.95714 0.94922 0.98941 1.69952 1.49078 1.08954 1.25928 0.86551 0.79487 0.79407 0.81876 1.20296 1.21404 1.20214 1.22546 0.97341 0.91412 0.95522 1.21408 1.14409 1.01030 0.93310 1.22443 1.02046 0.87384 0.98422 1.46502 1.54122 1.10795 1.08385 0.72410 1.77479 1.19563 1.17230 0.94702 0.92739 0.91575 0.92773 0.84850 0.99333 0.95426 0.92936 0.83921 0.81349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.14 37.16 0.34 -2.47 15 2 C 0.16 2.97 3.07 -68.86 -0.21 2.76 15 3 H 0.09 1.72 7.80 -51.93 -0.40 1.31 15 4 N -0.68 -15.46 6.06 -109.22 -0.66 -16.13 15 5 C 0.19 5.19 5.24 -4.97 -0.03 5.17 15 6 C -0.51 -14.93 9.32 -34.44 -0.32 -15.25 15 7 H 0.06 1.79 7.81 -52.49 -0.41 1.38 15 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 9 N -0.90 -27.24 13.29 55.43 0.74 -26.50 15 10 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 15 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 14 C 0.10 1.78 6.19 -82.41 -0.51 1.27 15 15 C -0.27 -3.89 10.74 -40.01 -0.43 -4.32 15 16 C 0.04 0.52 11.99 -17.22 -0.21 0.31 15 17 N -0.49 -6.48 7.36 30.45 0.22 -6.25 15 18 H 0.43 4.11 8.96 -182.62 -1.64 2.48 15 19 N -0.27 -4.83 12.47 33.67 0.42 -4.41 15 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.07 1.14 7.45 -51.93 -0.39 0.76 15 22 H 0.05 0.88 8.13 -51.93 -0.42 0.46 15 23 H 0.33 7.53 8.46 -39.29 -0.33 7.20 15 24 H -0.01 -0.31 7.44 -51.93 -0.39 -0.69 15 25 H 0.03 0.79 8.06 -51.93 -0.42 0.38 15 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 27 H 0.14 1.73 8.06 -52.49 -0.42 1.30 15 28 H 0.17 1.20 8.06 -52.48 -0.42 0.77 15 LS Contribution 247.86 15.07 3.74 3.74 Total: -1.00 -33.02 247.86 -6.83 -39.85 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.80 Total: 3.51 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -1.46 Total: -11.01 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.72 Total: -53.29 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.02 -6.83 -39.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037906971.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.386 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds