Wall clock time and date at job start Mon Mar 30 2020 02:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47028 * 2 1 4 4 N 1.46905 * 109.47234 * 239.99807 * 2 1 3 5 5 C 1.46904 * 110.99869 * 84.99851 * 4 2 1 6 6 C 1.50697 * 109.46838 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00086 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99638 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00238 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99834 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46904 * 60.00108 * 10 8 6 12 12 H 1.48499 * 109.47116 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47047 * 300.00147 * 10 8 6 14 14 C 1.50696 * 109.47214 * 119.99863 * 2 1 3 15 15 C 1.39870 * 125.89765 * 275.00259 * 14 2 1 16 16 C 1.35315 * 107.92205 * 179.97438 * 15 14 2 17 17 N 1.34948 * 107.74520 * 0.02562 * 16 15 14 18 18 H 0.96997 * 126.03916 * 180.02562 * 17 16 15 19 19 N 1.30839 * 125.90371 * 94.95819 * 14 2 1 20 20 H 1.08993 * 109.47357 * 300.00369 * 1 2 3 21 21 H 1.09002 * 109.47288 * 60.00425 * 1 2 3 22 22 H 1.08998 * 109.47028 * 180.02562 * 1 2 3 23 23 H 1.00900 * 110.99584 * 321.04514 * 4 2 1 24 24 H 1.08996 * 109.47066 * 300.00355 * 5 4 2 25 25 H 1.08999 * 109.46680 * 60.00261 * 5 4 2 26 26 H 0.97002 * 119.99713 * 180.02562 * 9 8 6 27 27 H 1.08001 * 126.04288 * 359.94312 * 15 14 2 28 28 H 1.08007 * 126.13167 * 179.73081 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5874 -0.5219 -3.5560 7 1 2.8363 -1.5700 -3.4798 8 6 2.7315 0.1351 -4.7596 9 7 2.4289 1.4116 -4.8523 10 14 3.3580 -0.7875 -6.2582 11 1 2.4362 -1.9092 -6.5699 12 1 3.4225 0.1378 -7.4179 13 1 4.7139 -1.3243 -5.9778 14 6 2.0324 -0.7104 1.2304 15 6 2.2126 -0.1359 2.4929 16 6 2.6754 -1.0970 3.3255 17 7 2.7848 -2.2390 2.6149 18 1 3.0920 -3.0945 2.9533 19 7 2.3745 -1.9712 1.3026 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.4496 -1.4980 -1.4100 24 1 1.0871 0.6162 -2.5525 25 1 2.7589 1.0461 -2.1182 26 1 2.5299 1.8737 -5.6992 27 1 2.0174 0.8931 2.7566 28 1 2.9188 -0.9714 4.3703 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037906971.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:25 Heat of formation + Delta-G solvation = 43.343599 kcal Electronic energy + Delta-G solvation = -11812.361840 eV Core-core repulsion = 9670.663099 eV Total energy + Delta-G solvation = -2141.698741 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.93768 -37.83406 -34.92847 -32.59477 -30.78179 -30.46619 -27.90153 -24.85859 -23.53858 -21.86185 -20.40128 -18.94646 -18.40019 -16.76071 -16.03842 -15.62281 -15.28614 -15.08790 -14.29884 -14.24713 -13.91751 -13.54716 -13.26289 -13.00565 -12.62288 -12.47206 -12.24447 -11.91535 -11.47906 -11.24508 -10.64856 -10.22029 -9.52898 -9.03023 -8.20352 -6.30909 1.14939 1.41149 1.45067 1.53056 1.95342 2.20513 2.41621 3.12429 3.56219 3.84885 4.18655 4.30282 4.36644 4.62873 4.84784 4.91450 5.00648 5.09137 5.17757 5.24217 5.35607 5.63495 5.77879 6.05257 6.48471 6.65081 6.72630 6.90095 6.97708 7.39378 8.90850 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.062233 B = 0.007518 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.815300 B = 3723.624244 C = 3965.334751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.153 3.847 3 H 0.081 0.919 4 N -0.680 5.680 5 C 0.211 3.789 6 C -0.537 4.537 7 H 0.058 0.942 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.972 3.028 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.271 1.271 14 C 0.078 3.922 15 C -0.295 4.295 16 C 0.074 3.926 17 N -0.480 5.480 18 H 0.449 0.551 19 N -0.318 5.318 20 H 0.082 0.918 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.334 0.666 24 H -0.029 1.029 25 H 0.000 1.000 26 H 0.266 0.734 27 H 0.161 0.839 28 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 -4.049 15.844 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.099 0.901 4 N -0.310 5.310 5 C 0.083 3.917 6 C -0.576 4.576 7 H 0.077 0.923 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.796 3.204 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.196 1.196 14 C -0.089 4.089 15 C -0.325 4.325 16 C -0.074 4.074 17 N -0.190 5.190 18 H 0.295 0.705 19 N -0.142 5.142 20 H 0.101 0.899 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.151 0.849 24 H -0.012 1.012 25 H 0.018 0.982 26 H 0.074 0.926 27 H 0.178 0.822 28 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.720 -4.906 15.250 16.036 hybrid contribution -0.525 0.334 -0.548 0.829 sum -1.245 -4.573 14.702 15.447 Atomic orbital electron populations 1.22284 0.94863 1.02095 1.02623 1.19937 0.93530 0.96007 0.86448 0.90093 1.60486 1.56649 1.09836 1.04052 1.19226 0.93349 0.91427 0.87669 1.21501 1.44095 0.97054 0.94911 0.92345 1.25904 0.95544 0.95815 1.02185 1.70073 1.49634 1.10499 1.26990 0.85406 0.78997 0.78268 0.77722 1.19177 1.20478 1.19637 1.22377 0.98573 0.91937 0.96009 1.21713 1.15779 1.02695 0.92327 1.23210 0.98626 0.85523 1.00062 1.46508 1.53100 1.12228 1.07116 0.70529 1.77356 1.21469 1.17692 0.97651 0.89899 0.93099 0.92743 0.84879 1.01172 0.98216 0.92562 0.82166 0.75970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 9.14 71.98 0.66 -4.59 15 2 C 0.15 5.92 3.07 44.17 0.14 6.06 15 3 H 0.08 3.20 7.80 -2.39 -0.02 3.19 15 4 N -0.68 -32.12 6.06 -499.46 -3.03 -35.14 15 5 C 0.21 11.78 5.24 85.56 0.45 12.22 15 6 C -0.54 -32.06 9.32 25.60 0.24 -31.82 15 7 H 0.06 3.44 7.81 -2.91 -0.02 3.42 15 8 C 0.00 0.22 5.46 84.65 0.46 0.69 15 9 N -0.93 -57.29 13.29 21.45 0.28 -57.01 15 10 Si 0.97 45.66 29.54 68.60 2.03 47.69 15 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 15 14 C 0.08 2.73 6.19 43.10 0.27 3.00 15 15 C -0.30 -7.79 10.74 21.99 0.24 -7.56 15 16 C 0.07 1.44 11.99 83.54 1.00 2.44 15 17 N -0.48 -11.47 7.36 -57.59 -0.42 -11.89 15 18 H 0.45 7.30 8.96 -213.34 -1.91 5.39 15 19 N -0.32 -11.25 12.47 -47.39 -0.59 -11.84 15 20 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 21 H 0.05 1.80 7.45 -2.39 -0.02 1.79 15 22 H 0.05 1.77 8.13 -2.39 -0.02 1.75 15 23 H 0.33 15.57 8.46 -89.69 -0.76 14.81 15 24 H -0.03 -1.71 7.44 -2.39 -0.02 -1.73 15 25 H 0.00 -0.02 8.06 -2.39 -0.02 -0.03 15 26 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 27 H 0.16 3.49 8.06 -2.91 -0.02 3.47 15 28 H 0.22 1.82 8.06 -2.91 -0.02 1.79 15 Total: -1.00 -72.41 247.86 0.22 -72.19 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -1.50 Total: 15.57 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 3.45 Total: -19.56 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -3.76 Total: -115.89 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -72.41 0.22 -72.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037906971.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.536 kcal (2) G-P(sol) polarization free energy of solvation -72.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds