Wall clock time and date at job start Mon Mar 30 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00401 * 2 1 4 4 H 1.48497 * 109.47045 * 269.99792 * 3 2 1 5 5 H 1.48495 * 109.46827 * 29.99765 * 3 2 1 6 6 H 1.48495 * 109.46827 * 150.00016 * 3 2 1 7 7 C 1.37879 * 119.99451 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00475 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99630 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47137 * 180.02562 * 9 7 2 11 11 C 1.46906 * 111.00471 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.44459 * 327.38612 * 11 10 9 13 13 C 1.54580 * 110.40337 * 89.77551 * 11 10 9 14 14 C 1.55920 * 104.64566 * 118.79416 * 13 11 10 15 15 H 1.08992 * 115.92804 * 160.84349 * 14 13 11 16 16 C 1.55932 * 104.49778 * 289.72461 * 14 13 11 17 17 C 1.54580 * 104.64558 * 70.27533 * 16 14 13 18 18 C 1.55926 * 110.40275 * 205.00051 * 11 10 9 19 19 H 1.08995 * 115.91945 * 80.36944 * 18 11 10 20 20 C 1.56955 * 100.65130 * 33.77779 * 14 13 11 21 21 H 0.96999 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47047 * 60.00417 * 9 7 2 23 23 H 1.08996 * 109.47854 * 299.99670 * 9 7 2 24 24 H 1.00900 * 111.00183 * 303.95517 * 10 9 7 25 25 H 1.09009 * 110.40102 * 0.02562 * 13 11 10 26 26 H 1.08998 * 110.40440 * 237.58613 * 13 11 10 27 27 H 1.08995 * 110.40153 * 311.48737 * 16 14 13 28 28 H 1.09001 * 110.40060 * 189.06160 * 16 14 13 29 29 H 1.08999 * 110.40576 * 241.21024 * 17 16 14 30 30 H 1.08997 * 110.40443 * 118.78990 * 17 16 14 31 31 H 1.08994 * 112.02791 * 189.69471 * 20 14 13 32 32 H 1.09002 * 112.02288 * 63.17252 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4399 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0000 10 7 4.0010 -2.5792 0.0001 11 6 5.4696 -2.6185 0.0001 12 1 5.8732 -1.7688 -0.5504 13 6 6.0084 -2.6272 1.4489 14 6 6.7912 -3.9702 1.5704 15 1 7.5108 -4.0302 2.3868 16 6 5.6853 -5.0694 1.5545 17 6 5.1465 -5.0607 0.1057 18 6 5.9775 -3.9572 -0.6174 19 1 5.9886 -4.0056 -1.7062 20 6 7.3583 -4.1082 0.1135 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6798 0.8895 23 1 3.8745 -0.6811 -0.8905 24 1 3.6258 -3.0953 0.7817 25 1 5.1836 -2.6027 2.1613 26 1 6.6770 -1.7817 1.6108 27 1 4.8904 -4.8189 2.2569 28 1 6.1134 -6.0426 1.7948 29 1 4.0867 -4.8060 0.0958 30 1 5.3096 -6.0296 -0.3662 31 1 7.8075 -5.0862 -0.0594 32 1 8.0439 -3.2986 -0.1367 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041047174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:10 Heat of formation + Delta-G solvation = -1.708846 kcal Electronic energy + Delta-G solvation = -12619.891020 eV Core-core repulsion = 10579.779002 eV Total energy + Delta-G solvation = -2040.112018 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.04734 -34.54683 -32.20026 -29.66159 -28.83463 -27.68077 -25.19609 -21.63356 -21.13960 -19.73175 -18.37803 -16.74795 -16.08093 -15.10940 -14.58471 -14.26827 -13.58428 -12.87289 -12.40111 -12.33275 -11.94246 -11.51026 -11.38100 -11.09934 -10.97591 -10.73711 -10.63614 -10.51229 -10.35795 -10.15197 -9.79934 -9.57369 -9.21093 -8.57572 -7.36310 -6.04600 -4.02140 3.29629 3.36547 3.39375 4.43241 4.68850 4.70795 4.81595 5.22154 5.28868 5.45280 5.50102 5.60130 5.60441 5.71047 5.80633 5.87972 5.95889 6.04752 6.26266 6.30204 6.32012 6.38314 6.58436 6.61108 6.72654 6.84401 7.07951 7.64632 7.96900 8.39482 8.68446 9.03573 9.57842 11.08791 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060621 B = 0.009071 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.775753 B = 3085.856609 C = 3267.437753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.163 3.837 10 N -0.671 5.671 11 C 0.083 3.917 12 H 0.070 0.930 13 C -0.149 4.149 14 C -0.105 4.105 15 H 0.089 0.911 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.088 4.088 19 H 0.094 0.906 20 C -0.126 4.126 21 H 0.263 0.737 22 H -0.017 1.017 23 H 0.020 0.980 24 H 0.336 0.664 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.857 -7.086 2.134 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.096 0.904 9 C 0.035 3.965 10 N -0.301 5.301 11 C -0.029 4.029 12 H 0.088 0.912 13 C -0.189 4.189 14 C -0.123 4.123 15 H 0.107 0.893 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.107 4.107 19 H 0.113 0.887 20 C -0.164 4.164 21 H 0.073 0.927 22 H 0.001 0.999 23 H 0.038 0.962 24 H 0.155 0.845 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.594 -7.013 1.453 15.365 hybrid contribution 0.532 1.300 0.944 1.693 sum 14.126 -5.713 2.397 15.425 Atomic orbital electron populations 1.69904 1.06157 1.26830 1.51142 1.24914 0.94746 0.98953 0.94779 0.86817 0.80256 0.83853 0.78564 1.20179 1.21253 1.19273 1.21084 0.89072 0.94744 1.50420 0.90371 1.20017 0.96473 0.85389 0.94590 1.60539 1.04024 1.16186 1.49378 1.22608 0.89933 0.96847 0.93497 0.91199 1.23437 0.99819 0.96696 0.98901 1.23520 0.96512 0.95496 0.96800 0.89281 1.22631 0.97739 0.97827 0.97670 1.22570 1.01532 0.97633 0.94269 1.23509 0.93426 0.95419 0.98326 0.88746 1.23558 0.96950 1.00579 0.95268 0.92693 0.99927 0.96172 0.84471 0.91603 0.92495 0.91968 0.92594 0.89683 0.92816 0.91696 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.51 -14.96 9.87 -34.44 -0.34 -15.30 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.16 4.03 4.37 -4.98 -0.02 4.01 16 10 N -0.67 -14.01 5.34 -105.47 -0.56 -14.57 16 11 C 0.08 1.41 2.93 -65.32 -0.19 1.22 16 12 H 0.07 1.25 7.82 -51.93 -0.41 0.84 16 13 C -0.15 -2.27 5.87 -24.34 -0.14 -2.41 16 14 C -0.10 -1.33 5.19 -85.35 -0.44 -1.77 16 15 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.12 -1.55 6.21 -24.33 -0.15 -1.70 16 17 C -0.12 -1.73 5.95 -24.34 -0.14 -1.87 16 18 C -0.09 -1.27 5.05 -85.35 -0.43 -1.71 16 19 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 20 C -0.13 -1.54 6.42 -22.45 -0.14 -1.68 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H -0.02 -0.42 7.20 -51.93 -0.37 -0.80 16 23 H 0.02 0.51 7.51 -51.93 -0.39 0.12 16 24 H 0.34 6.88 6.86 -39.29 -0.27 6.61 16 25 H 0.07 1.08 7.28 -51.92 -0.38 0.70 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.83 7.83 -51.93 -0.41 0.42 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.38 6.12 -51.93 -0.32 1.06 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 248.83 15.07 3.75 3.75 Total: -1.00 -30.08 248.83 -7.91 -37.98 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.09 Total: 2.15 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -2.11 Total: -19.31 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.21 Total: -41.84 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.08 -7.91 -37.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041047174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.274 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds