Wall clock time and date at job start Mon Mar 30 2020 02:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48500 * 109.47415 * 270.00450 * 3 2 1 5 5 H 1.48507 * 109.46880 * 30.00020 * 3 2 1 6 6 H 1.48496 * 109.47099 * 150.00130 * 3 2 1 7 7 C 1.37875 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00529 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47631 * 185.19224 * 9 7 2 11 11 C 1.46894 * 111.00119 * 70.61531 * 10 9 7 12 12 C 1.53004 * 109.47344 * 190.00087 * 11 10 9 13 13 C 1.52999 * 117.49910 * 243.61980 * 12 11 10 14 14 C 1.52993 * 60.00161 * 252.51206 * 13 12 11 15 15 C 1.46898 * 111.00212 * 194.57177 * 10 9 7 16 16 C 1.53005 * 117.50031 * 353.39634 * 15 10 9 17 17 C 1.52997 * 117.50097 * 62.06000 * 15 10 9 18 18 H 0.97006 * 120.00237 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.47118 * 65.18682 * 9 7 2 20 20 H 1.09006 * 109.46819 * 305.19515 * 9 7 2 21 21 H 1.09005 * 109.47627 * 310.00159 * 11 10 9 22 22 H 1.09000 * 109.47335 * 70.00422 * 11 10 9 23 23 H 1.09004 * 115.54817 * 29.32942 * 12 11 10 24 24 H 1.08998 * 117.50180 * 0.02562 * 13 12 11 25 25 H 1.09000 * 117.49402 * 145.01723 * 13 12 11 26 26 H 1.09005 * 117.50282 * 252.51328 * 14 13 12 27 27 H 1.08997 * 117.52477 * 107.48086 * 14 13 12 28 28 H 1.08999 * 115.55330 * 207.73252 * 15 10 9 29 29 H 1.08994 * 117.50424 * 215.00587 * 16 15 10 30 30 H 1.09006 * 117.49282 * 0.03118 * 16 15 10 31 31 H 1.08999 * 117.49765 * 359.97438 * 17 15 10 32 32 H 1.09002 * 117.50109 * 145.00096 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5733 -0.1269 11 6 3.7470 -3.1014 -1.4739 12 6 4.0375 -4.6034 -1.4962 13 6 5.1746 -5.0897 -2.3969 14 6 3.7205 -5.3652 -2.7846 15 6 5.4281 -2.6583 0.2112 16 6 6.1728 -1.3465 0.4675 17 6 5.8406 -2.2792 1.6349 18 1 -0.4851 0.8401 -0.0004 19 1 3.8752 -0.7631 0.9316 20 1 3.8745 -0.6016 -0.8410 21 1 2.7043 -2.9290 -1.7411 22 1 4.3940 -2.5956 -2.1906 23 1 3.8844 -5.1259 -0.5518 24 1 5.7161 -4.3396 -2.9733 25 1 5.7700 -5.9322 -2.0451 26 1 3.3591 -6.3891 -2.6879 27 1 3.3045 -4.7965 -3.6162 28 1 5.9794 -3.4632 -0.2749 29 1 7.2138 -1.2884 0.1499 30 1 5.6036 -0.4205 0.3856 31 1 5.0531 -1.9663 2.3206 32 1 6.6632 -2.8347 2.0854 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:12 Heat of formation + Delta-G solvation = 56.789764 kcal Electronic energy + Delta-G solvation = -12469.505883 eV Core-core repulsion = 10431.930555 eV Total energy + Delta-G solvation = -2037.575328 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.53003 -36.59245 -33.42470 -32.00067 -28.12510 -25.12107 -22.51372 -22.09757 -21.64960 -20.31408 -18.82645 -17.11114 -15.83149 -14.88161 -14.79725 -14.24537 -13.88687 -12.99929 -12.55996 -12.40398 -11.95110 -11.73541 -11.30290 -11.13399 -10.92934 -10.66301 -10.50275 -10.31480 -10.04407 -9.80238 -9.68489 -9.48432 -9.16464 -8.56949 -7.23138 -6.05538 -4.02635 3.26949 3.35022 3.36820 4.07897 4.32046 4.41251 4.67767 5.09063 5.22913 5.26373 5.31224 5.44962 5.47802 5.64112 5.79407 5.86755 6.05781 6.10114 6.12402 6.24995 6.31638 6.41201 6.53689 6.63585 6.74410 6.85579 6.98243 7.62619 7.91255 8.08633 8.66175 9.04891 9.56498 11.07612 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.031995 B = 0.011990 C = 0.009529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.939575 B = 2334.640750 C = 2937.838947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.873 3.127 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.082 0.918 9 C 0.160 3.840 10 N -0.494 5.494 11 C 0.094 3.906 12 C -0.135 4.135 13 C -0.192 4.192 14 C -0.181 4.181 15 C 0.029 3.971 16 C -0.230 4.230 17 C -0.177 4.177 18 H 0.263 0.737 19 H 0.032 0.968 20 H -0.012 1.012 21 H 0.094 0.906 22 H 0.024 0.976 23 H 0.110 0.890 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.882 -5.950 -2.607 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.100 0.900 9 C 0.034 3.966 10 N -0.215 5.215 11 C -0.034 4.034 12 C -0.153 4.153 13 C -0.229 4.229 14 C -0.219 4.219 15 C -0.081 4.081 16 C -0.269 4.269 17 C -0.215 4.215 18 H 0.073 0.927 19 H 0.050 0.950 20 H 0.005 0.995 21 H 0.112 0.888 22 H 0.042 0.958 23 H 0.128 0.872 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.427 -6.114 -2.279 12.300 hybrid contribution 0.879 1.482 -0.529 1.803 sum 11.307 -4.632 -2.808 12.537 Atomic orbital electron populations 1.69892 1.06081 1.26796 1.51053 1.24892 0.94723 0.98753 0.94910 0.86898 0.80375 0.84208 0.78481 1.20330 1.21107 1.19253 1.21058 0.88728 0.94775 1.50253 0.90029 1.20269 0.96878 0.84013 0.95393 1.61771 1.10681 1.23696 1.25385 1.21598 1.02220 0.90442 0.89164 1.22424 1.01467 0.96576 0.94874 1.23040 0.91537 1.03361 1.05000 1.22901 0.98214 1.01131 0.99628 1.22683 0.90143 0.96740 0.98570 1.23572 1.00869 0.97058 1.05392 1.23006 1.02768 1.03490 0.92190 0.92667 0.95037 0.99477 0.88804 0.95825 0.87226 0.89343 0.89453 0.89168 0.88967 0.87286 0.89884 0.88225 0.88471 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.63 27.37 -169.99 -4.65 16.97 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.39 6.69 56.52 0.38 -6.01 16 7 C -0.51 -14.55 8.90 -34.44 -0.31 -14.85 16 8 H 0.08 2.54 7.91 -52.49 -0.41 2.13 16 9 C 0.16 3.91 2.43 -4.98 -0.01 3.90 16 10 N -0.49 -10.48 4.67 -228.09 -1.06 -11.55 16 11 C 0.09 1.80 5.08 -3.83 -0.02 1.78 16 12 C -0.13 -2.13 4.88 -90.62 -0.44 -2.57 16 13 C -0.19 -2.51 9.89 -26.73 -0.26 -2.77 16 14 C -0.18 -2.45 10.25 -26.73 -0.27 -2.72 16 15 C 0.03 0.51 5.81 -67.71 -0.39 0.12 16 16 C -0.23 -3.91 9.53 -26.69 -0.25 -4.17 16 17 C -0.18 -2.93 9.97 -26.69 -0.27 -3.19 16 18 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 19 H 0.03 0.78 5.32 -51.93 -0.28 0.51 16 20 H -0.01 -0.31 6.99 -51.93 -0.36 -0.67 16 21 H 0.09 2.05 7.10 -51.93 -0.37 1.68 16 22 H 0.02 0.44 7.85 -51.93 -0.41 0.03 16 23 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 24 H 0.09 1.13 8.03 -51.93 -0.42 0.72 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.11 1.74 7.03 -51.93 -0.37 1.37 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.10 1.92 5.92 -51.93 -0.31 1.61 16 31 H 0.10 1.77 7.68 -51.93 -0.40 1.37 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 260.11 15.07 3.92 3.92 Total: -1.00 -29.66 260.11 -8.37 -38.03 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.01 Total: 2.03 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.33 Total: -22.58 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.29 Total: -38.37 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.65 Total: 16.97 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.66 -8.37 -38.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.818 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds