Wall clock time and date at job start Mon Mar 30 2020 02:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48500 * 109.47415 * 270.00450 * 3 2 1 5 5 H 1.48507 * 109.46880 * 30.00020 * 3 2 1 6 6 H 1.48496 * 109.47099 * 150.00130 * 3 2 1 7 7 C 1.37875 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00529 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47631 * 185.19224 * 9 7 2 11 11 C 1.46894 * 111.00119 * 70.61531 * 10 9 7 12 12 C 1.53004 * 109.47344 * 190.00087 * 11 10 9 13 13 C 1.52999 * 117.49910 * 243.61980 * 12 11 10 14 14 C 1.52993 * 60.00161 * 252.51206 * 13 12 11 15 15 C 1.46898 * 111.00212 * 194.57177 * 10 9 7 16 16 C 1.53005 * 117.50031 * 353.39634 * 15 10 9 17 17 C 1.52997 * 117.50097 * 62.06000 * 15 10 9 18 18 H 0.97006 * 120.00237 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.47118 * 65.18682 * 9 7 2 20 20 H 1.09006 * 109.46819 * 305.19515 * 9 7 2 21 21 H 1.09005 * 109.47627 * 310.00159 * 11 10 9 22 22 H 1.09000 * 109.47335 * 70.00422 * 11 10 9 23 23 H 1.09004 * 115.54817 * 29.32942 * 12 11 10 24 24 H 1.08998 * 117.50180 * 0.02562 * 13 12 11 25 25 H 1.09000 * 117.49402 * 145.01723 * 13 12 11 26 26 H 1.09005 * 117.50282 * 252.51328 * 14 13 12 27 27 H 1.08997 * 117.52477 * 107.48086 * 14 13 12 28 28 H 1.08999 * 115.55330 * 207.73252 * 15 10 9 29 29 H 1.08994 * 117.50424 * 215.00587 * 16 15 10 30 30 H 1.09006 * 117.49282 * 0.03118 * 16 15 10 31 31 H 1.08999 * 117.49765 * 359.97438 * 17 15 10 32 32 H 1.09002 * 117.50109 * 145.00096 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5733 -0.1269 11 6 3.7470 -3.1014 -1.4739 12 6 4.0375 -4.6034 -1.4962 13 6 5.1746 -5.0897 -2.3969 14 6 3.7205 -5.3652 -2.7846 15 6 5.4281 -2.6583 0.2112 16 6 6.1728 -1.3465 0.4675 17 6 5.8406 -2.2792 1.6349 18 1 -0.4851 0.8401 -0.0004 19 1 3.8752 -0.7631 0.9316 20 1 3.8745 -0.6016 -0.8410 21 1 2.7043 -2.9290 -1.7411 22 1 4.3940 -2.5956 -2.1906 23 1 3.8844 -5.1259 -0.5518 24 1 5.7161 -4.3396 -2.9733 25 1 5.7700 -5.9322 -2.0451 26 1 3.3591 -6.3891 -2.6879 27 1 3.3045 -4.7965 -3.6162 28 1 5.9794 -3.4632 -0.2749 29 1 7.2138 -1.2884 0.1499 30 1 5.6036 -0.4205 0.3856 31 1 5.0531 -1.9663 2.3206 32 1 6.6632 -2.8347 2.0854 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:12 Heat of formation + Delta-G solvation = 37.885493 kcal Electronic energy + Delta-G solvation = -12470.325634 eV Core-core repulsion = 10431.930555 eV Total energy + Delta-G solvation = -2038.395079 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.00499 -37.81618 -35.28633 -33.90090 -30.06463 -26.76157 -24.23001 -23.24571 -23.00324 -21.68403 -20.37020 -19.17726 -17.38454 -16.57721 -16.12500 -15.95897 -15.35909 -14.76341 -14.36733 -13.85606 -13.67040 -13.39143 -12.87113 -12.52689 -12.36066 -12.31494 -11.96701 -11.91669 -11.73824 -11.34521 -11.27642 -10.98811 -10.81712 -10.67132 -8.84812 -8.31355 -6.34473 1.30056 1.31860 1.42866 2.30612 2.81900 3.01383 3.02711 3.25776 3.87129 4.03222 4.12346 4.15048 4.17086 4.26848 4.47917 4.67685 4.71579 4.79345 4.81116 4.95211 4.97867 5.06108 5.10343 5.16819 5.31059 5.31443 5.41341 5.53218 5.98827 6.41642 6.65150 6.72654 7.29195 8.85478 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.031995 B = 0.011990 C = 0.009529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.939575 B = 2334.640750 C = 2937.838947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.518 4.518 8 H 0.036 0.964 9 C 0.176 3.824 10 N -0.514 5.514 11 C 0.100 3.900 12 C -0.157 4.157 13 C -0.164 4.164 14 C -0.177 4.177 15 C 0.016 3.984 16 C -0.224 4.224 17 C -0.170 4.170 18 H 0.267 0.733 19 H 0.030 0.970 20 H -0.014 1.014 21 H 0.051 0.949 22 H 0.029 0.971 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.135 0.865 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.822 -6.092 -2.935 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.049 3.951 10 N -0.236 5.236 11 C -0.028 4.028 12 C -0.176 4.176 13 C -0.201 4.201 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.263 4.263 17 C -0.208 4.208 18 H 0.076 0.924 19 H 0.048 0.952 20 H 0.004 0.996 21 H 0.070 0.930 22 H 0.047 0.953 23 H 0.119 0.881 24 H 0.113 0.887 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.108 0.892 28 H 0.152 0.848 29 H 0.134 0.866 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.384 -6.276 -2.607 15.011 hybrid contribution -0.088 1.426 -0.429 1.492 sum 13.297 -4.850 -3.036 14.476 Atomic orbital electron populations 1.70046 1.08036 1.28110 1.52446 1.25823 0.95607 1.02989 0.94375 0.85761 0.79443 0.78869 0.79181 1.19186 1.20387 1.17554 1.21277 0.91177 0.93203 1.49970 0.94596 1.19942 0.93890 0.86266 0.94968 1.61654 1.13706 1.21532 1.26686 1.21466 0.99785 0.93144 0.88389 1.22171 1.05493 0.94117 0.95822 1.23117 0.90996 1.03545 1.02442 1.23014 0.99164 1.01504 0.97802 1.22836 0.88191 0.98342 0.99980 1.23575 1.02078 0.95328 1.05338 1.23084 1.03018 1.03332 0.91329 0.92367 0.95231 0.99625 0.93005 0.95333 0.88083 0.88715 0.87057 0.87462 0.89249 0.84788 0.86613 0.90703 0.90826 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 2 C 0.01 0.57 5.47 84.65 0.46 1.03 16 3 Si 0.94 44.93 27.37 68.60 1.88 46.81 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.25 -11.24 6.69 99.48 0.67 -10.57 16 7 C -0.52 -30.84 8.90 25.60 0.23 -30.61 16 8 H 0.04 2.40 7.91 -2.91 -0.02 2.37 16 9 C 0.18 8.71 2.43 85.56 0.21 8.91 16 10 N -0.51 -21.95 4.67 -875.54 -4.09 -26.04 16 11 C 0.10 3.91 5.08 86.31 0.44 4.35 16 12 C -0.16 -4.83 4.88 -10.79 -0.05 -4.89 16 13 C -0.16 -3.75 9.89 30.59 0.30 -3.45 16 14 C -0.18 -4.48 10.25 30.59 0.31 -4.17 16 15 C 0.02 0.53 5.81 44.92 0.26 0.79 16 16 C -0.22 -7.00 9.53 30.62 0.29 -6.71 16 17 C -0.17 -5.20 9.97 30.62 0.31 -4.90 16 18 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 19 H 0.03 1.47 5.32 -2.39 -0.01 1.46 16 20 H -0.01 -0.68 6.99 -2.38 -0.02 -0.70 16 21 H 0.05 2.41 7.10 -2.38 -0.02 2.39 16 22 H 0.03 1.06 7.85 -2.39 -0.02 1.04 16 23 H 0.10 3.27 8.14 -2.39 -0.02 3.26 16 24 H 0.09 2.08 8.03 -2.39 -0.02 2.06 16 25 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.13 3.80 7.03 -2.39 -0.02 3.78 16 29 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.07 2.73 5.92 -2.38 -0.01 2.72 16 31 H 0.07 2.61 7.68 -2.39 -0.02 2.60 16 32 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -66.40 260.11 1.88 -64.51 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.04 Total: 14.11 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 2.76 Total: -39.63 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -3.79 Total: -85.79 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.81 kcal Total: -66.40 1.88 -64.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.398 kcal (2) G-P(sol) polarization free energy of solvation -66.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds