Wall clock time and date at job start Mon Mar 30 2020 02:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.39910 * 2 1 4 4 C 1.34672 * 106.81700 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01948 * 0.22851 * 4 3 2 6 6 C 1.30502 * 109.25683 * 359.61488 * 5 4 3 7 7 C 1.50700 * 125.64425 * 180.14781 * 6 5 4 8 8 C 1.53001 * 109.47027 * 270.27259 * 7 6 5 9 9 N 1.46502 * 109.47031 * 180.02562 * 8 7 6 10 10 C 1.36935 * 120.00290 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99657 * 359.97438 * 10 9 8 12 12 C 1.38813 * 120.00169 * 179.97438 * 10 9 8 13 13 N 1.31615 * 120.00176 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99831 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47399 * 60.00066 * 14 12 10 16 16 H 1.48497 * 109.47016 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47057 * 299.99882 * 14 12 10 18 18 H 1.09003 * 109.47221 * 90.02476 * 1 2 3 19 19 H 1.09003 * 109.47097 * 210.02578 * 1 2 3 20 20 H 1.09001 * 109.46668 * 330.02549 * 1 2 3 21 21 H 1.07997 * 126.58796 * 359.97438 * 3 2 1 22 22 H 1.08002 * 125.98510 * 179.97438 * 4 3 2 23 23 H 1.08994 * 109.47481 * 30.27445 * 7 6 5 24 24 H 1.09006 * 109.46847 * 150.28064 * 7 6 5 25 25 H 1.08999 * 109.47577 * 300.00557 * 8 7 6 26 26 H 1.08998 * 109.46940 * 60.00867 * 8 7 6 27 27 H 0.96998 * 119.99840 * 359.97438 * 9 8 7 28 28 H 0.96999 * 120.00035 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 -0.0042 6 6 2.2663 -1.0870 0.0006 7 6 1.8019 -2.5206 0.0008 8 6 1.6451 -3.0062 -1.4416 9 7 1.1931 -4.3997 -1.4414 10 6 0.9828 -5.0515 -2.6271 11 1 1.1498 -4.5381 -3.5626 12 6 0.5549 -6.3721 -2.6269 13 7 0.3519 -6.9979 -1.4870 14 14 0.2688 -7.2614 -4.2445 15 1 1.5336 -7.2943 -5.0219 16 1 -0.1820 -8.6500 -3.9729 17 1 -0.7733 -6.5468 -5.0247 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 1.9613 2.1345 -0.0004 22 1 4.4369 1.2611 0.0003 23 1 2.5363 -3.1404 0.5150 24 1 0.8430 -2.5918 0.5143 25 1 0.9107 -2.3864 -1.9559 26 1 2.6039 -2.9350 -1.9551 27 1 1.0434 -4.8609 -0.6013 28 1 0.0526 -7.9205 -1.4869 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045134569.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:19 Heat of formation + Delta-G solvation = 69.168703 kcal Electronic energy + Delta-G solvation = -11781.795459 eV Core-core repulsion = 9641.216578 eV Total energy + Delta-G solvation = -2140.578881 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.88287 -35.23375 -33.84714 -32.36754 -30.09265 -27.54057 -26.71676 -23.88643 -21.60084 -21.19470 -19.49844 -17.26580 -16.62247 -15.62595 -14.70795 -14.60916 -13.82295 -13.36946 -13.31099 -13.24359 -12.78765 -12.68111 -12.19761 -11.11764 -11.03870 -10.83036 -10.68819 -10.10996 -9.75334 -9.71170 -9.44338 -8.86331 -8.16908 -6.92836 -5.75541 -3.04772 2.20079 2.93351 3.35574 3.45751 3.49938 3.51282 4.55991 4.74012 4.77242 4.94304 5.11941 5.37059 5.47187 5.54922 5.63674 5.83497 5.92774 6.12334 6.23500 6.43974 6.76785 6.82731 6.95541 7.34354 7.71099 8.33776 8.43054 9.54246 10.10095 10.45824 11.47332 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.070296 B = 0.006921 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.220662 B = 4044.826508 C = 4109.747626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.460 5.460 3 C -0.072 4.072 4 C -0.031 4.031 5 N -0.493 5.493 6 C 0.228 3.772 7 C -0.045 4.045 8 C 0.163 3.837 9 N -0.732 5.732 10 C -0.240 4.240 11 H 0.070 0.930 12 C -0.013 4.013 13 N -0.934 5.934 14 Si 0.909 3.091 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.286 1.286 18 H 0.078 0.922 19 H 0.090 0.910 20 H 0.082 0.918 21 H 0.170 0.830 22 H 0.166 0.834 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.015 0.985 26 H 0.028 0.972 27 H 0.384 0.616 28 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 14.996 4.085 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.142 5.142 3 C -0.205 4.205 4 C -0.179 4.179 5 N -0.211 5.211 6 C -0.035 4.035 7 C -0.085 4.085 8 C 0.034 3.966 9 N -0.377 5.377 10 C -0.371 4.371 11 H 0.088 0.912 12 C -0.209 4.209 13 N -0.583 5.583 14 Si 0.740 3.260 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.213 1.213 18 H 0.097 0.903 19 H 0.109 0.891 20 H 0.100 0.900 21 H 0.187 0.813 22 H 0.184 0.816 23 H 0.114 0.886 24 H 0.096 0.904 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.218 0.782 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.112 14.451 3.909 14.971 hybrid contribution -0.956 0.066 -0.629 1.146 sum -0.843 14.517 3.280 14.907 Atomic orbital electron populations 1.22059 0.76738 1.04446 1.03938 1.45340 1.07609 1.06680 1.54594 1.22598 0.91511 0.92375 1.13986 1.22275 0.96231 0.91448 1.07959 1.70296 1.18702 1.11693 1.20451 1.23393 0.85523 0.91015 1.03591 1.20265 1.01668 0.86052 1.00486 1.20533 0.97242 0.87211 0.91587 1.42312 1.81019 1.07772 1.06586 1.19179 1.37695 0.94233 0.86031 0.91217 1.24738 1.02334 0.96909 0.96905 1.69647 1.52854 1.11760 1.23999 0.86243 0.77977 0.78819 0.83007 1.21185 1.21647 1.21296 0.90295 0.89111 0.89969 0.81268 0.81645 0.88592 0.90449 0.96732 0.95446 0.78208 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.97 59.85 0.66 1.37 15 2 N -0.46 -6.36 3.15 -121.27 -0.38 -6.74 15 3 C -0.07 -0.91 11.58 -16.56 -0.19 -1.10 15 4 C -0.03 -0.45 11.87 -17.81 -0.21 -0.66 15 5 N -0.49 -8.96 11.25 -10.81 -0.12 -9.08 15 6 C 0.23 3.87 7.16 -155.42 -1.11 2.75 15 7 C -0.05 -0.79 5.64 -27.88 -0.16 -0.95 15 8 C 0.16 3.47 6.24 -4.04 -0.03 3.44 15 9 N -0.73 -18.98 5.60 -59.91 -0.34 -19.32 15 10 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 15 11 H 0.07 1.94 7.83 -52.48 -0.41 1.53 15 12 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 15 13 N -0.93 -28.40 13.06 55.49 0.72 -27.67 15 14 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 15 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 18 H 0.08 0.77 8.14 -51.93 -0.42 0.34 15 19 H 0.09 0.89 7.05 -51.93 -0.37 0.52 15 20 H 0.08 0.59 8.14 -51.93 -0.42 0.16 15 21 H 0.17 1.47 8.06 -52.49 -0.42 1.04 15 22 H 0.17 1.91 8.06 -52.49 -0.42 1.49 15 23 H 0.10 1.74 8.14 -51.93 -0.42 1.31 15 24 H 0.08 1.22 7.07 -51.93 -0.37 0.85 15 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 27 H 0.38 10.26 7.67 -40.82 -0.31 9.95 15 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 LS Contribution 247.63 15.07 3.73 3.73 Total: -1.00 -33.43 247.63 -6.25 -39.68 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.55 Total: 4.46 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.29 Total: -2.64 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.11 Total: -62.81 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.43 -6.25 -39.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045134569.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.844 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds